View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11495_low_1 (Length: 599)

Name: NF11495_low_1
Description: NF11495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11495_low_1
NF11495_low_1
[»] chr2 (4 HSPs)
chr2 (381-551)||(5847550-5847721)
chr2 (498-551)||(38806410-38806463)
chr2 (415-455)||(36074179-36074219)
chr2 (481-513)||(38572243-38572275)
[»] chr1 (4 HSPs)
chr1 (471-551)||(43514814-43514894)
chr1 (392-458)||(43514889-43514955)
chr1 (471-513)||(14614393-14614435)
chr1 (465-503)||(7010903-7010941)
[»] chr4 (5 HSPs)
chr4 (380-551)||(54185085-54185238)
chr4 (431-553)||(45864457-45864588)
chr4 (496-551)||(49285933-49285988)
chr4 (392-471)||(49285982-49286061)
chr4 (471-531)||(34981550-34981610)
[»] chr3 (1 HSPs)
chr3 (493-551)||(46636630-46636688)
[»] chr6 (2 HSPs)
chr6 (471-510)||(34396942-34396981)
chr6 (471-513)||(1860425-1860467)
[»] chr5 (2 HSPs)
chr5 (471-507)||(7148420-7148455)
chr5 (410-454)||(26093124-26093168)


Alignment Details
Target: chr2 (Bit Score: 96; Significance: 9e-47; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 381 - 551
Target Start/End: Original strand, 5847550 - 5847721
Alignment:
Q  381 gaattctgcggttcacccaacatttttcgctcatgccctgcagtcattctaaaaatacccctgcgctagttaactcacatggcatgagtta-ctcacgta 479  Q
    |||||||||  ||||||||||| |||||||||  ||||||||||||||| |||||||   ||||||||||||||| ||  ||||||||||| |||||| |    
T  5847550 gaattctgctcttcacccaacacttttcgctcgcgccctgcagtcattccaaaaatatttctgcgctagttaacttacgcggcatgagttaactcacgca 5847649  T
Q  480 ggttataaactcagcgtgagttaactcacgctagggaaaatgtgaattttcttattcatttggcaactagta 551  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||| ||||||    
T  5847650 ggttataaactcagcgtgagttaactcatgctaggggaaatgtgaattatcttattcatttggcagctagta 5847721  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 498 - 551
Target Start/End: Original strand, 38806410 - 38806463
Alignment:
Q  498 agttaactcacgctagggaaaatgtgaattttcttattcatttggcaactagta 551  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  38806410 agttaactcacgttagggaaaatgtgaattttcttattcatttggcagctagta 38806463  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 455
Target Start/End: Complemental strand, 36074219 - 36074179
Alignment:
Q  415 gccctgcagtcattctaaaaatacccctgcgctagttaact 455  Q
    ||||||||||||||| |||||||||||| ||||||||||||    
T  36074219 gccctgcagtcattccaaaaatacccctacgctagttaact 36074179  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 481 - 513
Target Start/End: Complemental strand, 38572275 - 38572243
Alignment:
Q  481 gttataaactcagcgtgagttaactcacgctag 513  Q
    ||||||||| |||||||||||||||||||||||    
T  38572275 gttataaacccagcgtgagttaactcacgctag 38572243  T

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Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 471 - 551
Target Start/End: Complemental strand, 43514894 - 43514814
Alignment:
Q  471 actcacgtaggttataaactcagcgtgagttaactcacgctagggaaaatgtgaattttcttattcatttggcaactagta 551  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  43514894 actcacgtaggttataaactctgcgtgagttaactcacgctagggaaaatgtaaattttcttattcatttggcagctagta 43514814  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 392 - 458
Target Start/End: Complemental strand, 43514955 - 43514889
Alignment:
Q  392 ttcacccaacatttttcgctcatgccctgcagtcattctaaaaatacccctgcgctagttaactcac 458  Q
    |||||||| || |||||||||  ||||||||||||||| ||||||||| |||| |||||||||||||    
T  43514955 ttcacccagcacttttcgctcgcgccctgcagtcattccaaaaatacctctgcactagttaactcac 43514889  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 471 - 513
Target Start/End: Complemental strand, 14614435 - 14614393
Alignment:
Q  471 actcacgtaggttataaactcagcgtgagttaactcacgctag 513  Q
    ||||||| ||||||||||| |||||||||||||||||||||||    
T  14614435 actcacgcaggttataaacccagcgtgagttaactcacgctag 14614393  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 465 - 503
Target Start/End: Original strand, 7010903 - 7010941
Alignment:
Q  465 tgagttactcacgtaggttataaactcagcgtgagttaa 503  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  7010903 tgagttacttatgtaggttataaactcagcgtgagttaa 7010941  T

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Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 380 - 551
Target Start/End: Original strand, 54185085 - 54185238
Alignment:
Q  380 agaattctgcggttcacccaacatttttcgctcatgccctgcagtcattctaaaaatacccctgcgctagttaactcacatggcatgagttactcacgta 479  Q
    ||||||||||  |||||||| ||||||||| ||  ||||||||||||||| |||||||||||||||||||||||||||    |||||                 
T  54185085 agaattctgctcttcacccagcatttttcgttcgcgccctgcagtcattccaaaaatacccctgcgctagttaactcat---gcatg------------- 54185168  T
Q  480 ggttataaactcagcgtgagttaactcacgctagggaaaatgtgaattttcttattcatttggcaactagta 551  Q
      |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  54185169 --ttataaactcagtgtgagttaactcacgctagggaaaatgtgaattttcttattcatttggcagctagta 54185238  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 431 - 553
Target Start/End: Original strand, 45864457 - 45864588
Alignment:
Q  431 aaaaatacccctgcgctagttaactcacatggcatgagtta-ctcacgtaggttataaactcagcgtgag--------ttaactcacgctagggaaaatg 521  Q
    ||||||| | ||||||||||||||||||  ||||||||||| |||| | | |||||||||||||||||||        ||||||||||||||||||||||    
T  45864457 aaaaatatctctgcgctagttaactcacgcggcatgagttaactcatgaaagttataaactcagcgtgagtcgctgagttaactcacgctagggaaaatg 45864556  T
Q  522 tgaattttcttattcatttggcaactagtatt 553  Q
    |||||||||||||||||||| || ||||||||    
T  45864557 tgaattttcttattcatttgacagctagtatt 45864588  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 496 - 551
Target Start/End: Complemental strand, 49285988 - 49285933
Alignment:
Q  496 tgagttaactcacgctagggaaaatgtgaattttcttattcatttggcaactagta 551  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49285988 tgagttaactcacgctagggaaaatgtgaattttcttattcatttggcaactagta 49285933  T

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Target: chr4; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 392 - 471
Target Start/End: Complemental strand, 49286061 - 49285982
Alignment:
Q  392 ttcacccaacatttttcgctcatgccctgcagtcattctaaaaatacccctgcgctagttaactcacatggcatgagtta 471  Q
    |||||||| || |||||||||  |||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  49286061 ttcacccagcacttttcgctcgcgccctgtagtcattccaaaaatacccctgcgctagttaactcacgtggcatgagtta 49285982  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 471 - 531
Target Start/End: Original strand, 34981550 - 34981610
Alignment:
Q  471 actcacgtaggttataaactcagcgtgagttaactcacgctagggaaaatgtgaattttct 531  Q
    ||||||| | ||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  34981550 actcacgaatgttataaacccagcgtgagttaactcacactagggaaaatgtgaattttct 34981610  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 493 - 551
Target Start/End: Original strand, 46636630 - 46636688
Alignment:
Q  493 gcgtgagttaactcacgctagggaaaatgtgaattttcttattcatttggcaactagta 551  Q
    |||| ||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||    
T  46636630 gcgttagttaactcgcgctaggaaaaatgtgaattttcttattcatttggcagctagta 46636688  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 510
Target Start/End: Original strand, 34396942 - 34396981
Alignment:
Q  471 actcacgtaggttataaactcagcgtgagttaactcacgc 510  Q
    ||||| ||||||||||| ||||||||||||||||||||||    
T  34396942 actcatgtaggttataatctcagcgtgagttaactcacgc 34396981  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 471 - 513
Target Start/End: Original strand, 1860425 - 1860467
Alignment:
Q  471 actcacgtaggttataaactcagcgtgagttaactcacgctag 513  Q
    ||||||| ||||||||||| ||| |||||||||||||||||||    
T  1860425 actcacgcaggttataaacccagtgtgagttaactcacgctag 1860467  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 471 - 507
Target Start/End: Complemental strand, 7148455 - 7148420
Alignment:
Q  471 actcacgtaggttataaactcagcgtgagttaactca 507  Q
    ||||||||||||||||| |||||||||||||||||||    
T  7148455 actcacgtaggttataa-ctcagcgtgagttaactca 7148420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 410 - 454
Target Start/End: Complemental strand, 26093168 - 26093124
Alignment:
Q  410 ctcatgccctgcagtcattctaaaaatacccctgcgctagttaac 454  Q
    |||| ||| ||||| ||||| ||||||||||||||||||||||||    
T  26093168 ctcacgccatgcaggcattccaaaaatacccctgcgctagttaac 26093124  T

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