View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11495_low_3 (Length: 551)
Name: NF11495_low_3
Description: NF11495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11495_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 530; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Complemental strand, 25589401 - 25588868
Alignment:
| Q |
1 |
caatatgttagtgtatgatatctgaatcacctgtaatggagtgacgccaccagcgatgtcccaatcatttttatagtcaggaataatgtacttaggcgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25589401 |
caatatgttagtgtatgatatctgaatcacctgtaatggagtgacgccaccagcgatgtcccaatcatttttatagtcaggaataatgtacttaggcgat |
25589302 |
T |
|
| Q |
101 |
gcaccagataaaaccatggcagatatagctgataaatgagaattcctaggaagaatcagatattctcccggtgaacaggttgccattattgctgcctgga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25589301 |
gcaccagataaaaccatggcagatatagctgataaatgagaattcctaggaagaatcagatattctcccggtgaacaggttgccattattgctgcctgga |
25589202 |
T |
|
| Q |
201 |
ctccacaagtagtaccgttgacaagaaaccatgtctctgatgatccgaacagtttggatgcttctctttgtgcttctaatatgggcccttggggacaaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25589201 |
ctccacaagtagtaccgttgacaagaaaccatgtctctgatgatccgaacagtttggatgcttctctttgtgcttctaatatgggcccttggggacaaaa |
25589102 |
T |
|
| Q |
301 |
gaggttgtcaagctctggaatgctagacaaatcatgagcatatggtcttactccaatgagttgagtcaacgaagaaggagcggcatggcctctgttgtgt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25589101 |
gaggttgtcaagctctggaatgctagacaaatcatgagcatatggtcttactccaatgagttgagtcaacgaagaaggagcggcatggcctctgttgtgt |
25589002 |
T |
|
| Q |
401 |
cctggaaagtgaaaactggcagcattttcttcagctgaggctttcaatgcactgactagaggaggtaggccactctgctgaagcactggtgaattgctga |
500 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25589001 |
cctggaaagtgaaagctggcagcattttcttcagctgaggctttcaatgcactgactagaggaggtaggccactctgctgaagcactggtgaattgctga |
25588902 |
T |
|
| Q |
501 |
acaaaacggtgttgttcgtgattgatgcagtatt |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
25588901 |
acaaaacggtgttgttcgtgattgatgcagtatt |
25588868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Complemental strand, 25599053 - 25598520
Alignment:
| Q |
1 |
caatatgttagtgtatgatatctgaatcacctgtaatggagtgacgccaccagcgatgtcccaatcatttttatagtcaggaataatgtacttaggcgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25599053 |
caatatgttagtgtatgatatctgaatcacctgtaatggagtgacgccaccagcgatgtcccaatcatttttatagtcaggaataatgtacttaggcgat |
25598954 |
T |
|
| Q |
101 |
gcaccagataaaaccatggcagatatagctgataaatgagaattcctaggaagaatcagatattctcccggtgaacaggttgccattattgctgcctgga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25598953 |
gcaccagataaaaccatggcagatatagctgataaatgagaattcctaggaagaatcagatattctcccggtgaacaggttgccattattgctgcctgga |
25598854 |
T |
|
| Q |
201 |
ctccacaagtagtaccgttgacaagaaaccatgtctctgatgatccgaacagtttggatgcttctctttgtgcttctaatatgggcccttggggacaaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25598853 |
ctccacaagtagtaccgttgacaagaaaccatgtctctgatgatccgaacagtttggatgcttctctttgtgcttctaatatgggcccttggggacaaaa |
25598754 |
T |
|
| Q |
301 |
gaggttgtcaagctctggaatgctagacaaatcatgagcatatggtcttactccaatgagttgagtcaacgaagaaggagcggcatggcctctgttgtgt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25598753 |
gaggttgtcaagctctggaatgctagacaaatcatgagcatatggtcttactccaatgagttgagtcaacgaagaaggagcggcatggcctctgttgtgt |
25598654 |
T |
|
| Q |
401 |
cctggaaagtgaaaactggcagcattttcttcagctgaggctttcaatgcactgactagaggaggtaggccactctgctgaagcactggtgaattgctga |
500 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25598653 |
cctggaaagtgaaagctggcagcattttcttcagctgaggctttcaatgcactgactagaggaggtaggccactctgctgaagcactggtgaattgctga |
25598554 |
T |
|
| Q |
501 |
acaaaacggtgttgttcgtgattgatgcagtatt |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
25598553 |
acaaaacggtgttgttcgtgattgatgcagtatt |
25598520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 23 - 499
Target Start/End: Complemental strand, 25584538 - 25584062
Alignment:
| Q |
23 |
tgaatcacctgtaatggagtgacgccaccagcgatgtcccaatcatttttatagtcaggaataatgtacttaggcgatgcaccagataaaaccatggcag |
122 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||| ||||| |||||||||| |
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|
| T |
25584538 |
tgaatcacctgtaatggcgtgacaccaccagcgatgtcccagtcatttttatagtcaggaacaatgtacttaggcactgcaccggataataccatggcag |
25584439 |
T |
|
| Q |
123 |
atatagctgataaatgagaattcctaggaagaatcagatattctcccggtgaacaggttgccattattgctgcctggactccacaagtagtaccgttgac |
222 |
Q |
| |
|
||||||||||||||||| |||| | ||||||||| ||| ||||||| ||||||||||||||||||||||||||||| | |||||||||||||| ||| |
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|
| T |
25584438 |
atatagctgataaatgacaatttcgaggaagaataagaaattctcctggtgaacaggttgccattattgctgcctgaatcccacaagtagtacctccgac |
25584339 |
T |
|
| Q |
223 |
aagaaaccatgtctctgatgatccgaacagtttggatgcttctctttgtgcttctaatatgggcccttggggacaaaagaggttgtcaagctctggaatg |
322 |
Q |
| |
|
||||||||||||||||||||| || || ||||||||||||||| |||||||||||||||| || ||||||||||| |||||||||||||| || |||| | |
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|
| T |
25584338 |
aagaaaccatgtctctgatgaaccaaaaagtttggatgcttctgtttgtgcttctaatataggtccttggggacagaagaggttgtcaagttcaggaa-g |
25584240 |
T |
|
| Q |
323 |
ct-agacaaatcatgagcatatggtcttactccaatgagttgagtcaacgaagaaggagcggcatggcctctgttgtgtcctggaaagtgaaaactggca |
421 |
Q |
| |
|
|| | ||||||||| ||||||||||| |||||||||| |||||| ||| | |||||| |||||||||||||| ||||| |||||||||||| | ||| |
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| T |
25584239 |
ctcgggtaaatcatgaacatatggtcttcttccaatgagtcgagtcatcgaggcaggagcagcatggcctctgttatgtccaggaaagtgaaaagtagca |
25584140 |
T |
|
| Q |
422 |
gcattttcttcagctgaggctttcaatgcactgactagaggaggtaggccactctgctgaagcactggtgaattgctg |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| | |||||||||||||| |
|
|
| T |
25584139 |
gcattttcttcagctgaggctttcaatgcactgactaaaggaggtaggccactctgccgaatctctggtgaattgctg |
25584062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 284 - 484
Target Start/End: Complemental strand, 48465997 - 48465798
Alignment:
| Q |
284 |
ggcccttggggacaaaagaggttgtcaagctctggaatgctagacaaatcatgagcatatggtcttactccaatgagttgagtcaacgaagaaggagcgg |
383 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| |||||| |||||||||||| |||| ||||||||||||| |
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|
| T |
48465997 |
ggcccttggggacaaaagaggttgtcaagttccggaatgctggacaaatcatgagcatattgtctta-tccaatgagttggatcaatgaagaaggagcgg |
48465899 |
T |
|
| Q |
384 |
catggcctctgttgtgtcctggaaagtgaaaactggcagcattttcttcagctgaggctttcaatgcactgactagaggaggtaggccactctgctgaag |
483 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| || ||||||| ||||| |
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|
| T |
48465898 |
catggcctctgtcgtgtccaggaaagtgaaaactggcagcattttcttcagctgaggctttcaatgcagagactagaagaggttgggcactctgttgaag |
48465799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 297 - 484
Target Start/End: Complemental strand, 42076773 - 42076584
Alignment:
| Q |
297 |
aaaagaggttgtcaagctctggaatgctagacaaatcatgagcatatggtcttactccaatgagttgagtcaacgaagaaggagcggcatggcctctgtt |
396 |
Q |
| |
|
||||||||||| |||| || ||||| | ||||||||||||||||| |||||| |||||||||||| ||||| |||||||||||||||||||||||||| |
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|
| T |
42076773 |
aaaagaggttgacaagttccagaatgttgtacaaatcatgagcatatagtcttattccaatgagttgggtcaatgaagaaggagcggcatggcctctgtt |
42076674 |
T |
|
| Q |
397 |
gtgtcctggaaagtgaaaactggcagcattttcttcagctgaggctttcaatgcac--tgactagaggaggtaggccactctgctgaagc |
484 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||| || |||||||||||||| |
|
|
| T |
42076673 |
gtgtccacgaaagtgaaaactggcagcattttcttcaagtgaggctttcaatgcacagagactaaaggaggttgggcactctgctgaagc |
42076584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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