View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11495_low_4 (Length: 542)
Name: NF11495_low_4
Description: NF11495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11495_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 11 - 521
Target Start/End: Original strand, 25602591 - 25603101
Alignment:
| Q |
11 |
cacagatagatgcaaggcgtgacatgatgccattgtttgattttattttgtaactatacactaaaacacaatatgaaattcataaactatacaaaatatt |
110 |
Q |
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| T |
25602591 |
cacagatagatgcaaggcatgacatgatgccattgtttgaatttattttgtaactatacactaaaacacaatatgaaattccaaaactatacaaaatatt |
25602690 |
T |
|
| Q |
111 |
tgcagagaaatatcataaagaattacaatatccaaaatgaatgattgattgcgatttgaagcattcaagggatgaaagaacaataagtgaacaatgnnnn |
210 |
Q |
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| T |
25602691 |
tgc-gagaaatatcataaagaattacaatatccaaaatgaatgaatgattgcgatttgaagcattcaagggatgaaagaacaataagtgaacaatgaaaa |
25602789 |
T |
|
| Q |
211 |
nnnngggttataacttataattgaattgaacaaaatttgcataataaattataagggtaattgagtatacctctaaccgggaaaatgttgattgcgattt |
310 |
Q |
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| T |
25602790 |
aaaagggttataacttataattgaattgaacaaaatttgcataataaattataagggtaattgagtttacctctaaccgggaaaatgttgattgcgattt |
25602889 |
T |
|
| Q |
311 |
gtaggaaccatgtgtcaatgttggattgaagaactcaattgaaagaaaaactgtggaaacaacacgatctagaaagagacaactcttgaaagattaagac |
410 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25602890 |
gtaggaaccatgtgtcaatgttggattgaagaactcgattgaaagaaaaactgtggagacaacacgatctagaaagagacaactcttgaaagattaagac |
25602989 |
T |
|
| Q |
411 |
agaga-gaagagataaaccgtttgatttatatagaaaggaagattaagatgacagataaacatgaaaagggggcatcatttgggtaagaaagatgtacac |
509 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
25602990 |
agagaggaagagataaaccgtttgatttatatagagaggaagattaagatgacagataaacatgaaaagggggcatgatttgggtaagaaagatgtacac |
25603089 |
T |
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| Q |
510 |
atagacaatgaa |
521 |
Q |
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||||||||||| |
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| T |
25603090 |
gtagacaatgaa |
25603101 |
T |
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