View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11495_low_6 (Length: 410)

Name: NF11495_low_6
Description: NF11495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11495_low_6
NF11495_low_6
[»] chr1 (1 HSPs)
chr1 (1-302)||(14121845-14122146)
[»] chr4 (2 HSPs)
chr4 (1-302)||(20008223-20008525)
chr4 (3-173)||(49622064-49622234)
[»] chr3 (4 HSPs)
chr3 (1-301)||(53325703-53326002)
chr3 (301-369)||(37321657-37321725)
chr3 (234-296)||(5481928-5481988)
chr3 (367-407)||(37321510-37321550)
[»] chr7 (2 HSPs)
chr7 (1-278)||(15636361-15636642)
chr7 (3-173)||(35048309-35048479)
[»] chr2 (2 HSPs)
chr2 (88-148)||(35056389-35056449)
chr2 (1-54)||(35056242-35056295)


Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 14122146 - 14121845
Alignment:
Q  1 gcagttatcgttgtgtggcgagagccgtggcagtgaatgcaatagcggcgatggtagaccagacaacaacggcgacgaaacgacaaaggcttgtagactt 100  Q
    ||||||||||||||| |||||||  |||||| |||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14122146 gcagttatcgttgtgcggcgagaatcgtggcggtgaatgcaacatcggcgatggtagagcagacaacaacggcgacgaaacgacaaaggcttgtagactt 14122047  T
Q  101 ggtggtgagatcaaccaattagtggcagttaaattgcatttggcgctgcaaacgtcagagtgatttcagttgcnnnnnnnattttatgcaaaataaataa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||       ||||||| ||||||||||||    
T  14122046 ggtggtgagatcaaccaattagtggcagttaaattgcatttggcgctgcaaacatgggagtgatttcagttgctttttttattttatacaaaataaataa 14121947  T
Q  201 gaataaaaaatgaaataagagagtgtgcgtgacttttccactgagcacgtgagtcgtgtattgtcgtgcattttaaatgtcgtgtgaaatagcaatgctc 300  Q
     |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14121946 taataaaaaataaaataagagagtgtgcgtgacttttccactgagcacgtgagtcgtgtattgtcgtgcgttttaaatgtcgtgtgaaatagcaatgctc 14121847  T
Q  301 tt 302  Q
    ||    
T  14121846 tt 14121845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 20008223 - 20008525
Alignment:
Q  1 gcagttatcgttgtgtggcgagagccgtggcagtgaatgcaatagcggcgatggtagaccagacaacaacggcgacgaaacgacaaaggcttgtagactt 100  Q
    ||||||||||||||| |||||||  |||||| |||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20008223 gcagttatcgttgtgcggcgagaatcgtggcggtgaatgcaacatcggcgatggtagagcagacaacaacggcgacgaaacgacaaaggcttgtagactt 20008322  T
Q  101 ggtggtgagatcaaccaattagtggcagttaaattgcatttggcgctgcaaacgtcagagtga-tttcagttgcnnnnnnnattttatgcaaaataaata 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||| ||||||||||       ||||||| |||||||||||    
T  20008323 ggtggtgagatcaaccaattagtggcagttaaattgcatttggcgctgcaaacatgggagtgattttcagttgctttttttattttatacaaaataaata 20008422  T
Q  200 agaataaaaaatgaaataagagagtgtgcgtgacttttccactgagcacgtgagtcgtgtattgtcgtgcattttaaatgtcgtgtgaaatagcaatgct 299  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  20008423 agaataaaaaataaaataagagagtgtgcgtgacttttccactgagcacgtgagtcgtgtattgtcgtgcgttttaaatgtcgtgtgaaatagcaatgct 20008522  T
Q  300 ctt 302  Q
    |||    
T  20008523 ctt 20008525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 3 - 173
Target Start/End: Complemental strand, 49622234 - 49622064
Alignment:
Q  3 agttatcgttgtgtggcgagagccgtggcagtgaatgcaatagcggcgatggtagaccagacaacaacggcgacgaaacgacaaaggcttgtagacttgg 102  Q
    |||||| |||||| ||||||| ||||||| |||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||  |||||| ||||    
T  49622234 agttatagttgtgcggcgagaaccgtggcggtgaatacaaaagcggcgatggtagagcagacaacaacggcgacgaaacgacaaaggtctgtagaattgg 49622135  T
Q  103 tggtgagatcaaccaattagtggcagttaaattgcatttggcgctgcaaacgtcagagtgatttcagttgc 173  Q
    |||||||||||| ||||||||||| || |||||||||||||||||| ||||||  ||||||||| ||||||    
T  49622134 tggtgagatcaatcaattagtggcggtgaaattgcatttggcgctgtaaacgtgggagtgatttgagttgc 49622064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 158; Significance: 6e-84; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 53325703 - 53326002
Alignment:
Q  1 gcagttatcgttgtgtggcgagagccgtggcagtgaatgcaatagcggcgatggtagaccagacaacaacggcgacgaaacgacaaaggcttgtagactt 100  Q
    |||||||| |||||||||||||| ||||||  |||||| ||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||    
T  53325703 gcagttatagttgtgtggcgagaaccgtggaggtgaatacaacagcggcgatggtagagcagacaacaatggcgacgaaacgacaaaggcttgtagaatt 53325802  T
Q  101 ggtggtgagatcaaccaattagtggcagttaaattgcatttggcgctgcaaacgtcagagtgatttcagttgcnnnnnnnattttatgcaaaataaataa 200  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||  ||||||||||||||||       ||||||| |||||| ||| |    
T  53325803 ggtggtgagatcaaccaattagtggcggttaaattgcatttggcgctgtaaacgtgggagtgatttcagttgctttttttattttatacaaaatcaatga 53325902  T
Q  201 gaataaaaaatgaaataagagagtgtgcgtgacttt-tccactgagcacgtgagtcgtgtattgtcgtgcattttaaatgtcgtgtgaaatagcaatgct 299  Q
    ||||| ||| | |||||  ||||||||||||||||| | |||| ||||||||||||||| |||||||||| ||| ||||||||||||||||| |||| ||    
T  53325903 gaatataaagtaaaata--agagtgtgcgtgactttgtacactaagcacgtgagtcgtgcattgtcgtgcgtttgaaatgtcgtgtgaaataacaatact 53326000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 301 - 369
Target Start/End: Complemental strand, 37321725 - 37321657
Alignment:
Q  301 tttcataaaaacttactgctttaaactcttgaagagcgtccttaaaatactcgttaacattttccttaa 369  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||    
T  37321725 tttcataaaaacttactgctttaaactcttgaagagtgtccttaagatacccgttaacattttccttaa 37321657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 296
Target Start/End: Original strand, 5481928 - 5481988
Alignment:
Q  234 ttttccactgagcacgtgagtcgtgtattgtcgtgcattttaaatgtcgtgtgaaatagcaat 296  Q
    |||| |||| ||||||||||||||||||||||||||  || |||||| |||||||||||||||    
T  5481928 ttttacactaagcacgtgagtcgtgtattgtcgtgc-gttgaaatgt-gtgtgaaatagcaat 5481988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 407
Target Start/End: Complemental strand, 37321550 - 37321510
Alignment:
Q  367 taaaacaataattagcactatctatatcaagatgcattctt 407  Q
    |||||||||||||||||||||||||| |||| || ||||||    
T  37321550 taaaacaataattagcactatctataacaaggtgtattctt 37321510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 123; Significance: 5e-63; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 15636361 - 15636642
Alignment:
Q  1 gcagttatcgttgtgtggcgagagccgtggcagtgaatgcaatagcggcgatggtagaccagacaacaacggcgacgaaacgacaaaggcttgtagactt 100  Q
    |||||||| |||||| | ||||| ||||||| |||||| ||| || ||||||||||||  |||||||||||||||||||| ||||||||||||| || ||    
T  15636361 gcagttatagttgtgcgacgagaaccgtggcggtgaatacaacagtggcgatggtagagaagacaacaacggcgacgaaaagacaaaggcttgtggaatt 15636460  T
Q  101 ggtggtgagatcaaccaattagtggcagttaaattgcatttggcgctgcaaacgtcagagtgatttcagttgcnnnnnnnattttatgcaaaataaataa 200  Q
     ||||||||||||||||||| ||||| ||||||||| |||||||| || ||||||  ||||||||||||||||       ||||||| |||||| |||||    
T  15636461 tgtggtgagatcaaccaattggtggcggttaaattgtatttggcggtgtaaacgtgggagtgatttcagttgctttttttattttatacaaaatcaataa 15636560  T
Q  201 gaataaaaaatgaa--ataagagagtgtgcgtgac--ttttccactgagcacgtgagtcgtgtattgtcgtgcattttaaat 278  Q
    ||||||||||| ||  |||||||||||||||||||  |||| |||| ||||||||||||||| |||||||||| ||| ||||    
T  15636561 gaataaaaaataaaatataagagagtgtgcgtgacttttttacactaagcacgtgagtcgtgcattgtcgtgcgtttgaaat 15636642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 3 - 173
Target Start/End: Complemental strand, 35048479 - 35048309
Alignment:
Q  3 agttatcgttgtgtggcgagagccgtggcagtgaatgcaatagcggcgatggtagaccagacaacaacggcgacgaaacgacaaaggcttgtagacttgg 102  Q
    |||||| |||||| ||||||| ||||||| |||||| ||| ||||||||||||||| |||||||||||||||||||||||| |||||  |||||| ||||    
T  35048479 agttatagttgtgcggcgagaaccgtggcggtgaatacaaaagcggcgatggtagagcagacaacaacggcgacgaaacgagaaaggtctgtagaattgg 35048380  T
Q  103 tggtgagatcaaccaattagtggcagttaaattgcatttggcgctgcaaacgtcagagtgatttcagttgc 173  Q
    |||||||||||| ||||||||||| || |||||||||||||||||| ||| ||  ||||||||| ||||||    
T  35048379 tggtgagatcaatcaattagtggcggtgaaattgcatttggcgctgtaaatgtgggagtgatttgagttgc 35048309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 35056389 - 35056449
Alignment:
Q  88 ggcttgtagacttggtggtgagatcaaccaattagtggcagttaaattgcatttggcgctg 148  Q
    |||||||||| ||||||||||||| |||||||||||||| | |||| |||||| |||||||    
T  35056389 ggcttgtagaattggtggtgagattaaccaattagtggcggctaaagtgcattcggcgctg 35056449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 35056242 - 35056295
Alignment:
Q  1 gcagttatcgttgtgtggcgagagccgtggcagtgaatgcaatagcggcgatgg 54  Q
    |||||||| |||||| ||||||| ||||||| ||||||| || |||||||||||    
T  35056242 gcagttatagttgtgcggcgagaaccgtggcggtgaatgtaacagcggcgatgg 35056295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University