View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11495_low_7 (Length: 346)
Name: NF11495_low_7
Description: NF11495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11495_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 10753034 - 10752850
Alignment:
| Q |
18 |
ataaatgtgtgcttgtttgaagctaagcttgctcgataaaaagaaatggaagactgaagtagatgcgtgaagatggctgctctagatatttaagttttgg |
117 |
Q |
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| T |
10753034 |
ataaatgtgtgcttgtttgaagctaagcttgctcgataaaaagaaatggaagactgaagtagatgcgtgaagatggctgctctagatatttaagttttgg |
10752935 |
T |
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| Q |
118 |
ttttctgaatgattattagtaaattttcttagcttgttttgttaatattattttgtatctgctcatgagaggctgattgatcaaa |
202 |
Q |
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| T |
10752934 |
ttttctgaatgattattagtaaattttcttagcttgttttgttaatattattttgtatctgctcatgagaggctgattgatcaaa |
10752850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 21 - 147
Target Start/End: Original strand, 2983060 - 2983185
Alignment:
| Q |
21 |
aatgtgtgcttgtttgaagctaagcttgctcgataaaaagaaatggaagactgaagtagatgcgtgaagatggctgctctagatattta-agttttggtt |
119 |
Q |
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| T |
2983060 |
aatgtgtgcttgttttaagcta-gcttgctcaataaaa-gaaatggaagactgaaggagatgcgtgaagatggctgctctagatattaagagttttgact |
2983157 |
T |
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| Q |
120 |
ttctgaatgattattagtaaattttctt |
147 |
Q |
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| T |
2983158 |
ttctgaatgattataagttaactttctt |
2983185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 84 - 181
Target Start/End: Complemental strand, 2708934 - 2708835
Alignment:
| Q |
84 |
gtgaagatggctgctctagatatttaagttttgg--ttttctgaatgattattagtaaattttcttagcttgttttgttaatattattttgtatctgctc |
181 |
Q |
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| T |
2708934 |
gtgaagatggctgctctagatattcaagttttttatttttatgaatgattattagtgaatttctttagcttattttgttaatgttattttgtatttgctc |
2708835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 43 - 157
Target Start/End: Complemental strand, 2706406 - 2706292
Alignment:
| Q |
43 |
agcttgctcgataaaaagaaatggaagactgaagtagatgcgtgaagatggctgctctagatatttaag-ttttggttttctgaatgattattagtaaat |
141 |
Q |
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||||||||| |||||| |||||||| ||||| | |||| |||||||||||||||||||||||| ||| |||| ||||||| |||||||||||| ||| |
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| T |
2706406 |
agcttgctcaataaaa-gaaatggaggactggaaaagatttgtgaagatggctgctctagatattcaagttttttattttctgcatgattattagttaat |
2706308 |
T |
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| Q |
142 |
tttcttagcttgtttt |
157 |
Q |
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|||||| |||||||| |
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| T |
2706307 |
tttcttttcttgtttt |
2706292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 200
Target Start/End: Original strand, 2992202 - 2992279
Alignment:
| Q |
118 |
ttttctgaatgattattagtaaattttcttagcttgttttgttaatattattttgtatctgctcatgagaggctgattgatca |
200 |
Q |
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| T |
2992202 |
ttttctgaatgattattagtgaattttctt-----gtcttgttaacgttattttgtatttgctcataagaggatgattgatca |
2992279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 147
Target Start/End: Complemental strand, 2708839 - 2708786
Alignment:
| Q |
95 |
tgctctagatatttaag-ttttggttttctgaatgattattagtaaattttctt |
147 |
Q |
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||||||||||||| ||| |||| |||||||||||||||||||| ||||||||| |
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| T |
2708839 |
tgctctagatattcaagatttttattttctgaatgattattagttaattttctt |
2708786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 200
Target Start/End: Original strand, 18358582 - 18358665
Alignment:
| Q |
118 |
ttttctgaatgattattagtaaattttctt-agcttgttttgttaatattattttgtatctgctcatgagaggctgattgatca |
200 |
Q |
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|||||||||||||||||||| ||||||||| |||||||||||| ||||||| ||| ||||||| ||||| |||||||||| |
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| T |
18358582 |
ttttctgaatgattattagtgaattttcttgtttttgttttgttaacgttattttttatttgctcataagaggatgattgatca |
18358665 |
T |
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