View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11495_low_9 (Length: 241)
Name: NF11495_low_9
Description: NF11495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11495_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 14122251 - 14122454
Alignment:
| Q |
18 |
gtcttctattttatatagttagatatatagaaatcatgttatatctacttgtgaatttagttgattaatttaagtttgtgttttgtaaaattttctgcat |
117 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
14122251 |
gtcttctattttatttagttagatatatagaaatcatgttatatccacttgttaatttagttgattagtttaagtttgtgttttgtaaaattttctgcat |
14122350 |
T |
|
| Q |
118 |
tagtggagacgggatctacttcttctgtccaagaggaggttgatcacataaatgaaaatagtgatgaaaatttagaagcaaatattgttcaagcagatga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14122351 |
tagtggagacgggatctacttcttctgtccaagaggaggttgatcacctaaatgaaaatagtgatgaaaatttagaagcaaatattgttcaagcagatga |
14122450 |
T |
|
| Q |
218 |
agaa |
221 |
Q |
| |
|
|||| |
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| T |
14122451 |
agaa |
14122454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 20008117 - 20007914
Alignment:
| Q |
18 |
gtcttctattttatatagttagatatatagaaatcatgttatatctacttgtgaatttagttgattaatttaagtttgtgttttgtaaaattttctgcat |
117 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
20008117 |
gtcttctattttatttagttagatatatagaaatcatgttatatccacttgttaatttagttgattagtttaagtttgtgttttgtaaaattttctgcat |
20008018 |
T |
|
| Q |
118 |
tagtggagacgggatctacttcttctgtccaagaggaggttgatcacataaatgaaaatagtgatgaaaatttagaagcaaatattgttcaagcagatga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
20008017 |
tagtggagacgggatctacttcttctgtccaagaggaggttgatcacctaaatgaaaatagtgattaaaatttagaagcaaatattgttcaagcaaatga |
20007918 |
T |
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| Q |
218 |
agaa |
221 |
Q |
| |
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|||| |
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|
| T |
20007917 |
agaa |
20007914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 33 - 224
Target Start/End: Original strand, 49622347 - 49622538
Alignment:
| Q |
33 |
tagttagatatatagaaatcatgttatatctacttgtgaatttagttgattaatttaagtttgtgttttgtaaaattttctgcattagtggagacgggat |
132 |
Q |
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||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||| |
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| T |
49622347 |
tagttagatatttagaaatcatgttatatccacttgttaatttagttgattaatttaagtttgtgtttcgtaaaatttgctgcattagtggaaacgggat |
49622446 |
T |
|
| Q |
133 |
ctacttcttctgtccaagaggaggttgatcacataaatgaaaatagtgatgaaaatttagaagcaaatattgttcaagcagatgaagaacct |
224 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
49622447 |
ctactttttctgtccaagaggaggttgatcacataaatgaaaacaatgatgaaaatttagaagcaaatattgttcaatcagatgatgaacct |
49622538 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 26 - 224
Target Start/End: Complemental strand, 53325600 - 53325401
Alignment:
| Q |
26 |
ttttatatagttagatatatagaaatcatgttatatctacttgtgaatttagttgattaatttaagtttgtgttttgtaaaattttctgcatt-agtgga |
124 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
53325600 |
ttttatctagttagatatatagaaatcatgttatatccacttgttaatttagttgattaatttaagtttgtgttttgtaaaattttctgtatttagtgga |
53325501 |
T |
|
| Q |
125 |
gacgggatctacttcttctgtccaagaggaggttgatcacataaatgaaaatagtgatgaaaatttagaagcaaatattgttcaagcagatgaagaacct |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
53325500 |
gacgggatctacttcttctgtccaagaggaggttgatcacataaatgaaaatagtgataaaaatttagaagcaaatattgttcaagcagatgaagaacct |
53325401 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 33 - 224
Target Start/End: Original strand, 35048592 - 35048783
Alignment:
| Q |
33 |
tagttagatatatagaaatcatgttatatctacttgtgaatttagttgattaatttaagtttgtgttttgtaaaattttctgcattagtggagacgggat |
132 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
35048592 |
tagttagatatttagaaatcatgttatatccacttgttaatttagttgattgatttaagtttgtgttttgtaaaatttgctgcattagtggaaacgggat |
35048691 |
T |
|
| Q |
133 |
ctacttcttctgtccaagaggaggttgatcacataaatgaaaatagtgatgaaaatttagaagcaaatattgttcaagcagatgaagaacct |
224 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
35048692 |
ctacttcttctgtccaagaggaggttgatcacataaatgaaaacagtgatgaaaatttagaagcaaatattgttcaagcagatgaggaacct |
35048783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 26 - 212
Target Start/End: Complemental strand, 15636293 - 15636115
Alignment:
| Q |
26 |
ttttatatagttagatatatagaaatcatgttatatctacttgtgaatttagttgattaatttaagtttgtgttttgtaaaattttctgca-ttagtgga |
124 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
15636293 |
ttttatctagttagatatatagaaatcatgttatatccacttgttaatttagttgattgatttaagtttgtgttttgtaaaattttctgcatttagtgga |
15636194 |
T |
|
| Q |
125 |
gacgggatctacttcttctgtccaagaggaggttgatcacataaatgaaaatagtgatgaaaatttagaagcaaatattgttcaagca |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15636193 |
gacgggatctacttcttctgtccaagaggagg---------taaatgaaaatagtgatgaaaatttagaagcaaatattgttcaagca |
15636115 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 210
Target Start/End: Original strand, 1177850 - 1177929
Alignment:
| Q |
131 |
atctacttcttctgtccaagaggaggttgatcacataaatgaaaatagtgatgaaaatttagaagcaaatattgttcaag |
210 |
Q |
| |
|
||||||||||||| |||||||| | ||||||||||||||| || | ||| ||||||||||||||||||| |||||| |
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|
| T |
1177850 |
atctacttcttctaattaagaggagatcgatcacataaatgaatattgcaatggaaatttagaagcaaatattattcaag |
1177929 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 7494890 - 7494960
Alignment:
| Q |
148 |
aagaggaggttgatcacataaatgaaaatagtgatgaaaatttagaagcaaatattgttcaagcagatgaa |
218 |
Q |
| |
|
|||||||| ||||||||||||||| ||| | ||||| ||||| |||| |||||||||||| | ||||||| |
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| T |
7494890 |
aagaggagagtgatcacataaatgagaattgagatgataattttgaagaaaatattgttcatgaagatgaa |
7494960 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 9284983 - 9284943
Alignment:
| Q |
163 |
acataaatgaaaatagtgatgaaaatttagaagcaaatatt |
203 |
Q |
| |
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|||||||||||||| ||||| |||||||| ||||||||||| |
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|
| T |
9284983 |
acataaatgaaaattgtgattaaaatttaaaagcaaatatt |
9284943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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