View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11496_high_1 (Length: 654)

Name: NF11496_high_1
Description: NF11496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11496_high_1
NF11496_high_1
[»] chr4 (1 HSPs)
chr4 (46-144)||(36085951-36086048)
[»] chr6 (3 HSPs)
chr6 (386-441)||(24414328-24414383)
chr6 (348-390)||(1759099-1759141)
chr6 (329-368)||(31038975-31039014)
[»] chr7 (2 HSPs)
chr7 (407-468)||(439887-439948)
chr7 (109-141)||(1335061-1335093)
[»] chr5 (2 HSPs)
chr5 (328-398)||(31184231-31184299)
chr5 (550-594)||(30397397-30397441)
[»] chr8 (1 HSPs)
chr8 (354-391)||(14983485-14983522)


Alignment Details
Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 36086048 - 36085951
Alignment:
Q  46 attcaactgaatttgatgatgaatttctgatttgtgagtttcatgatcctaattg-tgagttttttctaatttatgagttttaggttttagattcttatg 144  Q
    |||||||||||||||||||||| |||||||||||  ||||||| ||||||||||  |||||||  |||| ||||||||||||||||||||||||||||||    
T  36086048 attcaactgaatttgatgatgagtttctgatttg--agtttcacgatcctaatttatgagtttaatctagtttatgagttttaggttttagattcttatg 36085951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 386 - 441
Target Start/End: Complemental strand, 24414383 - 24414328
Alignment:
Q  386 ttgttagtgaagaattgaagatttcttccttccatctattaattgtatcggtttga 441  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  24414383 ttgttagtgcagaattgaagatttcttccttccatctattaattgtatcggtttga 24414328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 390
Target Start/End: Original strand, 1759099 - 1759141
Alignment:
Q  348 ttgtaatgttaggttttagaattgaaatgttagtgtgtttgtt 390  Q
    ||||||||||||||||||| |||||||||||||||| ||||||    
T  1759099 ttgtaatgttaggttttaggattgaaatgttagtgtatttgtt 1759141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 368
Target Start/End: Original strand, 31038975 - 31039014
Alignment:
Q  329 tgaatttttaattgaatacttgtaatgttaggttttagaa 368  Q
    |||||||  |||||||||||||||||||||||||||||||    
T  31038975 tgaatttaaaattgaatacttgtaatgttaggttttagaa 31039014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 407 - 468
Target Start/End: Complemental strand, 439948 - 439887
Alignment:
Q  407 tttcttccttccatctattaattgtatcggtttgagaagctaaaagagagaaagcagtgtga 468  Q
    |||||||||||||||| ||||||| || |||||||||||||||||||||||||  |||||||    
T  439948 tttcttccttccatctgttaattgaattggtttgagaagctaaaagagagaaattagtgtga 439887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 1335093 - 1335061
Alignment:
Q  109 ttctaatttatgagttttaggttttagattctt 141  Q
    |||||||||||||||||||||||||||||||||    
T  1335093 ttctaatttatgagttttaggttttagattctt 1335061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 328 - 398
Target Start/End: Original strand, 31184231 - 31184299
Alignment:
Q  328 ctgaatttttaattgaatacttgtaatgttaggttttagaattgaaatgttagtgtgtttgttagtgaaga 398  Q
    |||||||||||||| ||||||||| ||  |||||||||||||||||||||| || ||||||||| ||||||    
T  31184231 ctgaatttttaattcaatacttgttat--taggttttagaattgaaatgtttgtttgtttgttaatgaaga 31184299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 550 - 594
Target Start/End: Complemental strand, 30397441 - 30397397
Alignment:
Q  550 ctatggtatttcttaggaatgttttctagacgaacctatattgca 594  Q
    ||||||||||||||| || |||||||||||| |||||||||||||    
T  30397441 ctatggtatttcttaagactgttttctagactaacctatattgca 30397397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 354 - 391
Target Start/End: Complemental strand, 14983522 - 14983485
Alignment:
Q  354 tgttaggttttagaattgaaatgttagtgtgtttgtta 391  Q
    |||||||||||| |||||||||||||||||||||||||    
T  14983522 tgttaggttttaaaattgaaatgttagtgtgtttgtta 14983485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University