View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11496_high_13 (Length: 314)
Name: NF11496_high_13
Description: NF11496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11496_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 40 - 313
Target Start/End: Complemental strand, 3480210 - 3479937
Alignment:
| Q |
40 |
gcagaacctgtgtttagcaaggcaggagaaacaattggagtaaaccatatgggaatggaaataaccgatcaggtaaaaattgttattttgcttttcgaag |
139 |
Q |
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| T |
3480210 |
gcagaacctgtgtttagcaaggcaggagaaacaattggagtaaaccatatgggaatggaaataaccgatcaggtaaaaattgttattttgctttttgaag |
3480111 |
T |
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| Q |
140 |
ttacttgcattgtcttaaaattttggttgggcttaactcatccaatgtaaggtgtgagctgctccgacttattataaacaaatttacaagcaatatctca |
239 |
Q |
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| T |
3480110 |
ttacttgcattgtcttaaaattttggttgggcttaactcatccaatgtaaggtgtgagctgccccgacttattataaacaaatttacaagcaatatctca |
3480011 |
T |
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| Q |
240 |
tccaatgtgatctatgaagtgtgactcgagtgacccgatatcaggccactaaggtcacgccttagatatctagt |
313 |
Q |
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| T |
3480010 |
tccaatgtgatctatgaagtgtgactcgagtgacccgatatcaggccactaaggtcactctttagatatctagt |
3479937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 42 - 129
Target Start/End: Complemental strand, 3455606 - 3455519
Alignment:
| Q |
42 |
agaacctgtgtttagcaaggcaggagaaacaattggagtaaaccatatgggaatggaaataaccgatcaggtaaaaattgttattttg |
129 |
Q |
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| T |
3455606 |
agaacctgtgtttagcaaggcaggtgaaacaattggagtaaactatatgggaatggaaataacagatcaggtaaatattgttattttg |
3455519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 116
Target Start/End: Original strand, 48694740 - 48694814
Alignment:
| Q |
42 |
agaacctgtgtttagcaaggcaggagaaacaattggagtaaaccatatgggaatggaaataaccgatcaggtaaa |
116 |
Q |
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||||||||| || ||||||||||| |||||||||||| | || | ||||||||||| |||||||||||||||| |
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| T |
48694740 |
agaacctgtattcagcaaggcaggtgaaacaattggaatcaattacatgggaatggatgtaaccgatcaggtaaa |
48694814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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