View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11496_high_14 (Length: 305)
Name: NF11496_high_14
Description: NF11496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11496_high_14 |
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| [»] chr2 (8 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 33 - 305
Target Start/End: Original strand, 11119116 - 11119388
Alignment:
| Q |
33 |
ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
132 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119116 |
ccaacaactcccgataaattcgacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
11119215 |
T |
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| Q |
133 |
cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119216 |
cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct |
11119315 |
T |
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| Q |
233 |
tactggaaagaaaggagaaattagaaagcagtgcaattttgttaacaagaaatcttctgaattggatcttgct |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119316 |
tactggaaagaaaggagaaattagaaagcagtgcaattttgttaacaagaaatcttctgaattggatcttgct |
11119388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 33 - 303
Target Start/End: Original strand, 11111345 - 11111615
Alignment:
| Q |
33 |
ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
132 |
Q |
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||||| |||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11111345 |
ccaacgactcctgatacattggacaagaacttctacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattattctcaacaccgggtg |
11111444 |
T |
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| Q |
133 |
cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct |
232 |
Q |
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|||||||||||||||||||||||| ||||| ||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11111445 |
cagataccattagcattgtcaacagctttgcaaatagccaaaatgttttctttcagaactttataaattcaatgattaaaatgggtaatattgatgtgct |
11111544 |
T |
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| Q |
233 |
tactggaaagaaaggagaaattagaaagcagtgcaattttgttaacaagaaatcttctgaattggatcttg |
303 |
Q |
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||| ||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||| |
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| T |
11111545 |
taccggaaagaaaggagaaattagaaaacaatgcaattttattaacaagaaatcttctgaattggatcttg |
11111615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 33 - 304
Target Start/End: Complemental strand, 10793449 - 10793178
Alignment:
| Q |
33 |
ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
132 |
Q |
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||||| |||||||||| ||| |||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
10793449 |
ccaactactcctgatacattggacaagaacttctacaacaatcttcaggttaaaaagggtttgcttcaaagtgaccaagaattgttttcaacaccaaatg |
10793350 |
T |
|
| Q |
133 |
cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct |
232 |
Q |
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||||||||| ||||||||| || ||||||| || ||||||| || |||||| ||| ||||| || ||||||||||||||||||||||||| ||||| |
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| T |
10793349 |
cagataccactagcattgttaataactttgccaataaccaaagtgctttctttgagagctttaagaaagcaatgattaaaatgggtaatattggtgtgct |
10793250 |
T |
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| Q |
233 |
tactggaaagaaaggagaaattagaaagcagtgcaattttgttaacaagaaatcttctgaattggatcttgc |
304 |
Q |
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||| ||||||||||||||||| || || || ||||||||||||||||| ||||||||||| || |||||||| |
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| T |
10793249 |
taccggaaagaaaggagaaataaggaaacaatgcaattttgttaacaaaaaatcttctgagttagatcttgc |
10793178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 33 - 278
Target Start/End: Original strand, 11156597 - 11156842
Alignment:
| Q |
33 |
ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
132 |
Q |
| |
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||||| |||||||||||||| ||||||||||| ||| ||||||||||| |||||||| ||||| |||||||| ||||| |||||||||||| | |||| |
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| T |
11156597 |
ccaacgactcctgataaatttgacaagaactattactccaatcttcaagtgaaaaagggcttgctccaaagtgatcaagagttgttctcaacatccggtg |
11156696 |
T |
|
| Q |
133 |
cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct |
232 |
Q |
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||||||||||||||||||||||||| || | | | | ||||| | |||||| ||| ||||| | |||||||||||||||| |||||||| ||||| |
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| T |
11156697 |
cagataccattagcattgtcaacaaattcagcaccgatcaaaacgctttctttgagagctttaaggctgcaatgattaaaatgggcaatattggtgtgct |
11156796 |
T |
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| Q |
233 |
tactggaaagaaaggagaaattagaaagcagtgcaattttgttaac |
278 |
Q |
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|| || | ||||||||| |||||||| || ||||| ||||||||| |
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| T |
11156797 |
aacagggacgaaaggagagattagaaaacaatgcaactttgttaac |
11156842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 33 - 277
Target Start/End: Original strand, 11137655 - 11137899
Alignment:
| Q |
33 |
ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
132 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||| | ||||| ||| | |||| |
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| T |
11137655 |
ccaacgactcctgataaatttgacaagaactactactccaatcttcagggtaaaaagggtttgcttcagagtgaccaagagcttttctcgacatctggtg |
11137754 |
T |
|
| Q |
133 |
cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct |
232 |
Q |
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| ||||||||||||||||||||||| || | || |||||| |||||| | | |||| | | ||||||||||||||||||||||| ||||| |
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| T |
11137755 |
ctgataccattagcattgtcaacaagttcagtgctgacaaaaatgctttctttgatagctttgaagccgccatgattaaaatgggtaatattggtgtgct |
11137854 |
T |
|
| Q |
233 |
tactggaaagaaaggagaaattagaaagcagtgcaattttgttaa |
277 |
Q |
| |
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|| || || |||||||| |||||||| || |||||||||||||| |
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| T |
11137855 |
gaccgggaaaaaaggagagattagaaaacattgcaattttgttaa |
11137899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 33 - 162
Target Start/End: Original strand, 11145960 - 11146089
Alignment:
| Q |
33 |
ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
132 |
Q |
| |
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||||| |||||||||||||| ||||||||||| ||| |||||||||| ||||| ||||||||||||||||| ||||| |||||||||||| | |||| |
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| T |
11145960 |
ccaactactcctgataaatttgacaagaactattactctaatcttcaagtgaaaaaaggtttgcttcaaagtgatcaagagttgttctcaacatctggtg |
11146059 |
T |
|
| Q |
133 |
cagataccattagcattgtcaacaactttg |
162 |
Q |
| |
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| |||||||||||||||||||||||||||| |
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| T |
11146060 |
ctgataccattagcattgtcaacaactttg |
11146089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 33 - 277
Target Start/End: Original strand, 11149929 - 11150173
Alignment:
| Q |
33 |
ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
132 |
Q |
| |
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||||| |||||||||||||| ||||||||||| ||| |||||||||| |||||||||||||| |||||||| ||||| |||||||||||| | ||| |
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| T |
11149929 |
ccaacgactcctgataaatttgacaagaactattactctaatcttcaagtgaaaaagggtttgctccaaagtgatcaagagttgttctcaacatctggtt |
11150028 |
T |
|
| Q |
133 |
cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct |
232 |
Q |
| |
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||||||||||||||||||||||||| |||| || | | ||||| | ||| || ||| ||||| | | ||||| |||||||| |||||||| ||| | |
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| T |
11150029 |
cagataccattagcattgtcaacaaatttgcaaccgatcaaaaagctttttttgagagctttaaggctgctatgatcaaaatgggaaatattggtgtgtt |
11150128 |
T |
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| Q |
233 |
tactggaaagaaaggagaaattagaaagcagtgcaattttgttaa |
277 |
Q |
| |
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||||| || ||||||| |||||||| || ||||| |||||||| |
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| T |
11150129 |
aactgggaaacaaggagagattagaaaacaatgcaactttgttaa |
11150173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 11183671 - 11183613
Alignment:
| Q |
85 |
aaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtgcagataccatt |
143 |
Q |
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||||||| ||| |||| ||||||||||||||||| || ||||| ||||| ||||||||| |
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| T |
11183671 |
aaaaggggttgtttcagagtgaccaagaattgttttccacacctggtgctgataccatt |
11183613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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