View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11496_high_2 (Length: 499)

Name: NF11496_high_2
Description: NF11496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11496_high_2
NF11496_high_2
[»] chr3 (4 HSPs)
chr3 (197-462)||(44786277-44786532)
chr3 (32-175)||(24562969-24563111)
chr3 (32-175)||(8016584-8016726)
chr3 (32-162)||(8018722-8018851)
[»] chr2 (2 HSPs)
chr2 (32-175)||(40088143-40088286)
chr2 (32-175)||(40092736-40092879)
[»] scaffold0002 (1 HSPs)
scaffold0002 (32-175)||(495448-495590)
[»] chr7 (2 HSPs)
chr7 (32-176)||(4246296-4246441)
chr7 (32-175)||(4241702-4241846)
[»] chr8 (1 HSPs)
chr8 (32-175)||(12463093-12463235)
[»] chr1 (2 HSPs)
chr1 (32-175)||(8189284-8189425)
chr1 (32-175)||(8192465-8192609)


Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 197 - 462
Target Start/End: Original strand, 44786277 - 44786532
Alignment:
Q  197 atttcaaggtttttaggagcagcctcttcctgccactcaacaagattttaaattggcttcaaaatctaaaacaaacaaattcttaaaaagtagaggtgtc 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  44786277 atttcaaggtttttaggagcagcctcttcctgccactcaacaagattttaaattggcttcaaaatctaaaacaaacaaattcttaaaa-gtagaggtgtc 44786375  T
Q  297 cgcaactacaaattgactcgattaatatgatgattcaacccaatcaaaagcgtttgattcaattttattttagtctgaatcgaaccaaaataactcaatc 396  Q
    || || ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  44786376 cgtaagtacaaattgactcgattaatatgatgattcaactcaatcagaagcgtttgattcaattttattttagtctaaatcgaaccaaaataactcaatc 44786475  T
Q  397 agtttgtaagaatgatatgaattaaaacaaaaacaaaacccaatggaatttcccatccaatctttt 462  Q
    ||||||||||||||         |||||||||||||||||||| ||||||||||||||||||||||    
T  44786476 agtttgtaagaatg---------aaaacaaaaacaaaacccaacggaatttcccatccaatctttt 44786532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 32 - 175
Target Start/End: Original strand, 24562969 - 24563111
Alignment:
Q  32 tgactcatatccttgtatatctttccatttattccttgtagttatgttttcannnnnnnatctcctataatcatggaggaaaccttgtatatattcccta 131  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  24562969 tgactcatatccttgtatatctttccatttatttcttgtagttatgttttcatttttt-atctcctataatcatggaggaaaccttgtatatattcccta 24563067  T
Q  132 ctttcatatcaatgaaataaaccattataccattttcttttaca 175  Q
    ||| ||||||||||||||| |||| |||||||||||||||||||    
T  24563068 cttccatatcaatgaaatataccagtataccattttcttttaca 24563111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 32 - 175
Target Start/End: Original strand, 8016584 - 8016726
Alignment:
Q  32 tgactcatatccttgtatatctttccatttattccttgtagttatgttttcannnnnnnatctcctataatcatggaggaaaccttgtatatattcccta 131  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  8016584 tgactcatatccttgtatatctttccatttatttcttgtagttatgttttcatttttt-atctcctataatcatggaggaaaccttgtatatattcccta 8016682  T
Q  132 ctttcatatcaatgaaataaaccattataccattttcttttaca 175  Q
    ||||||||||||||||||| || | |||||| ||||||||||||    
T  8016683 ctttcatatcaatgaaatacactagtatacccttttcttttaca 8016726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 32 - 162
Target Start/End: Original strand, 8018722 - 8018851
Alignment:
Q  32 tgactcatatccttgtatatctttccatttattccttgtagttatgttttcannnnnnnatctcctataatcatggaggaaaccttgtatatattcccta 131  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||       ||||||||||||||||||| |||||||||||||||||||||    
T  8018722 tgactcatatccttgtatatctttccatttatttcttgtagttatgttttcatttttt-atctcctataatcatggagtaaaccttgtatatattcccta 8018820  T
Q  132 ctttcatatcaatgaaataaaccattatacc 162  Q
    ||||||||||||| ||||| |||| ||||||    
T  8018821 ctttcatatcaattaaatacaccagtatacc 8018851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 32 - 175
Target Start/End: Original strand, 40088143 - 40088286
Alignment:
Q  32 tgactcatatccttgtatatctttccatttattccttgtagttatgttttcannnnnnnatctcctataatcatggaggaaaccttgtatatattcccta 131  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  40088143 tgactcatatccttgtatatctttccatttatttcttgtagttatgttttcatttttttatctcctataatcatggaggaaaccttgtatatattcccta 40088242  T
Q  132 ctttcatatcaatgaaataaaccattataccattttcttttaca 175  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  40088243 ctttcatatcaatgaaatacaccattataccattttcttttaca 40088286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 32 - 175
Target Start/End: Original strand, 40092736 - 40092879
Alignment:
Q  32 tgactcatatccttgtatatctttccatttattccttgtagttatgttttcannnnnnnatctcctataatcatggaggaaaccttgtatatattcccta 131  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  40092736 tgactcatatccttgtatatctttccatttatttcttgtagttatgttttcatttttttatctcctataatcatggaggaaaccttgtatatattcccta 40092835  T
Q  132 ctttcatatcaatgaaataaaccattataccattttcttttaca 175  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  40092836 ctttcatatcaatgaaatacaccattataccattttcttttaca 40092879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 32 - 175
Target Start/End: Original strand, 495448 - 495590
Alignment:
Q  32 tgactcatatccttgtatatctttccatttattccttgtagttatgttttcannnnnnnatctcctataatcatggaggaaaccttgtatatattcccta 131  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  495448 tgactaatatccttgtatatctttccatttatttcttgtagttatgttttcatttttt-atctcctataatcatggaggaaaccttgtatatattcccta 495546  T
Q  132 ctttcatatcaatgaaataaaccattataccattttcttttaca 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  495547 ctttcatatcaatgaaataaaccattataccattttcttttaca 495590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 32 - 176
Target Start/End: Original strand, 4246296 - 4246441
Alignment:
Q  32 tgactcatatccttgtatatctttccatttattccttgtagttatgttttcannnnnnn-atctcctataatcatggaggaaaccttgtatatattccct 130  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||    
T  4246296 tgactcatatccttgtatatctttccatttatttcttgtagttatgttttcattttttttatctcctataatcatggaggaaaccttgtatatattccct 4246395  T
Q  131 actttcatatcaatgaaataaaccattataccattttcttttacaa 176  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  4246396 actttcatatcaatgaaatacaccattataccattttcttttacaa 4246441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 32 - 175
Target Start/End: Original strand, 4241702 - 4241846
Alignment:
Q  32 tgactcatatccttgtatatctttccatttattccttgtagttatgttttcannnnnnn-atctcctataatcatggaggaaaccttgtatatattccct 130  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||    
T  4241702 tgactcatatccttgtatatctttccatttatttcttgtagttatgttttcattttttttatctcctataatcatggaggaaaccttgtatatattccct 4241801  T
Q  131 actttcatatcaatgaaataaaccattataccattttcttttaca 175  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  4241802 actttcatatcaatgaaatacaccattataccattttcttttaca 4241846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 8e-53; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 32 - 175
Target Start/End: Original strand, 12463093 - 12463235
Alignment:
Q  32 tgactcatatccttgtatatctttccatttattccttgtagttatgttttcannnnnnnatctcctataatcatggaggaaaccttgtatatattcccta 131  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  12463093 tgactgatatccttgtatatctttccatttatttcttgtagttatgttttcatttttt-atctcctataatcatggaggaaaccttgtatatattcccta 12463191  T
Q  132 ctttcatatcaatgaaataaaccattataccattttcttttaca 175  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  12463192 ctttcatatcaatgaaatataccattataccattttcttttaca 12463235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 32 - 175
Target Start/End: Complemental strand, 8189425 - 8189284
Alignment:
Q  32 tgactcatatccttgtatatctttccatttattccttgtagttatgttttcannnnnnnatctcctataatcatggaggaaaccttgtatatattcccta 131  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  8189425 tgactcatatccttgtatatctttccatttatttcttgtagttatgttttcattttt--atctcctataatcatggaggaaaccttgtatatattcccta 8189328  T
Q  132 ctttcatatcaatgaaataaaccattataccattttcttttaca 175  Q
    ||||||||||||||||||| ||||  ||||||||||||||||||    
T  8189327 ctttcatatcaatgaaatacaccaggataccattttcttttaca 8189284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 32 - 175
Target Start/End: Complemental strand, 8192609 - 8192465
Alignment:
Q  32 tgactcatatccttgtatatctttccatttattccttgtagttatgttttcannnnnnnatctcctataatcatggaggaaaccttgtatatat--tccc 129  Q
    |||||||||| |||||||||||||||||||||| |||| |||||||||||||       |||||||||||||||||||||||||||||||||||  ||||    
T  8192609 tgactcatatacttgtatatctttccatttatttcttgcagttatgttttcatttttt-atctcctataatcatggaggaaaccttgtatatatattccc 8192511  T
Q  130 tactttcatatcaatgaaataaaccattataccattttcttttaca 175  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||    
T  8192510 tactttcatatcaatgaaatacaccagtataccattttcttttaca 8192465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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