View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11496_high_5 (Length: 367)
Name: NF11496_high_5
Description: NF11496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11496_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 73 - 309
Target Start/End: Complemental strand, 24169677 - 24169439
Alignment:
| Q |
73 |
cggtgtggtatttttaggacaagatgaggcataaaagatatcggcgttcaccccaagatcattccacttttgaattgactcac--atatcttgaatggaa |
170 |
Q |
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| T |
24169677 |
cggtgtggtatttttaggacaaggtaaggcataaaagatatcggggttcaccccaagatcattccacttttgaattgactcccgcatatcttgaatggaa |
24169578 |
T |
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| Q |
171 |
gcattttgagtgtctagtctttcattgacttccttaaactttagatcttgagcatcaaacctttcgttgatttccttaaattgcacgtctcgagcatcaa |
270 |
Q |
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| T |
24169577 |
gcattttgagagtctagtctttcattgacttccttaaactttagatcttgagcatcaaacctttcgttgatttccttgaattgcatgtcttgagcatcaa |
24169478 |
T |
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| Q |
271 |
atttttgagacatgaacttcttgagatcctttataccca |
309 |
Q |
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| T |
24169477 |
atttttgagacgtgaacttcttaagatcctttataccca |
24169439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 92 - 320
Target Start/End: Original strand, 11583737 - 11583967
Alignment:
| Q |
92 |
caagatgaggcataaaagatatcggcgttcaccccaagatcattccacttttgaattgactcac--atatcttgaatggaagcattttgagtgtctagtc |
189 |
Q |
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| T |
11583737 |
caaggtgaggcaaaaaaggtatcggtgttcaccccaagatcattccacttttgaatggactcccgcatatcttgaatggatgcattttgagaatctattc |
11583836 |
T |
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| Q |
190 |
tttcattgacttccttaaactttagatcttgagcatcaaacctttcgttgatttccttaaattgcacgtctcgagcatcaaatttttgagacatgaactt |
289 |
Q |
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| T |
11583837 |
tttcatggacttctttaaactttaaatcttgcgcatcaaaccttttgttgatttccttgaactgcatgtcttgagcatcaaacttttgagacatgtactt |
11583936 |
T |
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| Q |
290 |
cttgagatcctttatacccaccaagacttca |
320 |
Q |
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| T |
11583937 |
ctttagatcctttatccctaacaagacttca |
11583967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 128 - 292
Target Start/End: Complemental strand, 21216720 - 21216554
Alignment:
| Q |
128 |
agatcattccacttttgaattgac--tcacatatcttgaatggaagcattttgagtgtctagtctttcattgacttccttaaactttagatcttgagcat |
225 |
Q |
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| T |
21216720 |
agatcgttccacttttgaatagaccctcacattttttgaatggaaacattttgagaatctagtcatgtattgatatcattaaactttaagtcctgagcat |
21216621 |
T |
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| Q |
226 |
caaacctttcgttgatttccttaaattgcacgtctcgagcatcaaatttttgagacatgaacttctt |
292 |
Q |
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||||||||| |||||| || || || || | |||| |||||||||| |||||||||||| ||||||| |
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| T |
21216620 |
caaaccttttgttgatatctttgaactgtaagtcttgagcatcaaacttttgagacatgtacttctt |
21216554 |
T |
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