View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11496_high_6 (Length: 360)

Name: NF11496_high_6
Description: NF11496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11496_high_6
NF11496_high_6
[»] chr5 (1 HSPs)
chr5 (3-64)||(5313772-5313833)
[»] chr1 (2 HSPs)
chr1 (212-313)||(7016123-7016224)
chr1 (235-279)||(23915668-23915712)
[»] chr3 (2 HSPs)
chr3 (237-312)||(1072782-1072857)
chr3 (212-312)||(9505169-9505269)
[»] chr4 (2 HSPs)
chr4 (215-321)||(19455209-19455315)
chr4 (212-279)||(48339147-48339214)
[»] scaffold0204 (1 HSPs)
scaffold0204 (212-279)||(26669-26736)


Alignment Details
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 5313772 - 5313833
Alignment:
Q  3 atcagatgcaccgaccttaatcacgacgtctgttaagacatccaatcttaacgctcgagcga 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5313772 atcagatgcaccgaccttaatcacgacgtctgttaagacatccaatcttaacgctcgagcga 5313833  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 313
Target Start/End: Original strand, 7016123 - 7016224
Alignment:
Q  212 ttcgacaattaatttgtgaaacatggttcatgaatcaaatgagtttaactttagctgaaaactaagtttgctaacataatgaactaaacttgagttatat 311  Q
    |||||||||| ||||||  ||| ||||||||||| |||||||| | ||||| |||| ||||||||||||| |||| |||| | || | |||||| |||||    
T  7016123 ttcgacaattgatttgttgaacttggttcatgaaccaaatgagctgaacttgagctcaaaactaagtttgttaacctaataagctgagcttgagctatat 7016222  T
Q  312 ac 313  Q
    ||    
T  7016223 ac 7016224  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 23915668 - 23915712
Alignment:
Q  235 tggttcatgaatcaaatgagtttaactttagctgaaaactaagtt 279  Q
    ||||||||||| |||||||| | ||||||||||||||| ||||||    
T  23915668 tggttcatgaaccaaatgagctgaactttagctgaaaattaagtt 23915712  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 312
Target Start/End: Original strand, 1072782 - 1072857
Alignment:
Q  237 gttcatgaatcaaatgagtttaactttagctgaaaactaagtttgctaacataatgaactaaacttgagttatata 312  Q
    ||||||||| |||||||||| |  || ||| ||||| |||||||| ||| |||||||||| |||||||||||||||    
T  1072782 gttcatgaaccaaatgagttgagtttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatata 1072857  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 312
Target Start/End: Original strand, 9505169 - 9505269
Alignment:
Q  212 ttcgacaattaatttgtgaaacatggttcatgaatcaaatgagtttaactttagctgaaaactaagtttgctaacataatgaactaaacttgagttatat 311  Q
    |||||||||||| | ||  ||| ||||||||||| |||||||||| ||||| ||||||||| |||||| | |||   ||||| || |||||||| |||||    
T  9505169 ttcgacaattaactcgttgaacttggttcatgaaccaaatgagttgaacttgagctgaaaattaagttcgttaaataaatgagctgaacttgagatatat 9505268  T
Q  312 a 312  Q
    |    
T  9505269 a 9505269  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 321
Target Start/End: Original strand, 19455209 - 19455315
Alignment:
Q  215 gacaattaatttgtgaaacatggttcatgaatcaaatgagtttaactttagctgaaaactaagtttgctaacataatgaactaaacttgagttatataca 314  Q
    ||||||||||| ||  ||| |||||||||||||||||||| | ||||| || |||||| |||||||| || |  |||||  | |||||||| ||||||||    
T  19455209 gacaattaattcgttgaacttggttcatgaatcaaatgagctgaacttgagttgaaaattaagtttgttatctaaatgagttgaacttgagctatataca 19455308  T
Q  315 attcgac 321  Q
     ||||||    
T  19455309 gttcgac 19455315  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 48339147 - 48339214
Alignment:
Q  212 ttcgacaattaatttgtgaaacatggttcatgaatcaaatgagtttaactttagctgaaaactaagtt 279  Q
    |||||||| | ||||||  ||| |||||||||||||||||||||  ||||| ||||||||| ||||||    
T  48339147 ttcgacaactgatttgttgaacttggttcatgaatcaaatgagtcgaacttgagctgaaaattaagtt 48339214  T

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Target: scaffold0204 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 26669 - 26736
Alignment:
Q  212 ttcgacaattaatttgtgaaacatggttcatgaatcaaatgagtttaactttagctgaaaactaagtt 279  Q
    |||||||| | ||||||  ||| |||||||||||||||||||||  ||||| ||||||||| ||||||    
T  26669 ttcgacaactgatttgttgaacttggttcatgaatcaaatgagtcgaacttgagctgaaaattaagtt 26736  T

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