View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11496_low_1 (Length: 860)
Name: NF11496_low_1
Description: NF11496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11496_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 726; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 726; E-Value: 0
Query Start/End: Original strand, 16 - 845
Target Start/End: Complemental strand, 35591205 - 35590387
Alignment:
| Q |
16 |
cagcaactactgtgtcagtgcttccagctgaaacaaataagtcagtggagacagaaaatcaccctgaaaataaagttgtacctaaggacttctttgcaag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35591205 |
cagcaactactgtgtcagtgcttccagctgaaacaaataagtcagtggagacagaaaatcaccctgaaaataaagttgtacctaaggacttctttgcaag |
35591106 |
T |
|
| Q |
116 |
catgaaagaaattgaatctctctttgtcagagcatctgaatctggcaaagaggttccaagaatgcttgaagcaaataagttgcactttcgtcctatattt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35591105 |
catgaaagaaattgaatctctctttgtcagagcatctgaatctggcaaagaggttccaagaatgcttgaagcaaataagttgcactttcgtcctatattt |
35591006 |
T |
|
| Q |
216 |
ccgggcaaagaaagtaagtcctatagctctttattcttcttatgtctatgtatcagtcttcatatgggaaatattaaatttttagcatttctttagttag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35591005 |
ccgggcaaagaaagtaagtcctatagctctttattcttcttatgtctatgtatcagtcttcatatgggaaatattaaatttttagcatttctttagttag |
35590906 |
T |
|
| Q |
316 |
tcatggatcccctcttctgaattttgcacttgaaaggtgacatagtgatggagatcctggaaaggacacaaagagccctgcgcttacaggagaacatcca |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
35590905 |
tcatggatcccctcttctgaattttgcacttgaaaggtgacatagtgatggagatcctggaaaggacac--agagccctgcgcttgcaggagaacatcca |
35590808 |
T |
|
| Q |
416 |
aatccatttgcagagaagtgcaataaatataaaattgatgatattttttatgatacactttccttttgcttgtagtttataaactatgccacttctatag |
515 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35590807 |
aatccatttgcagagaagtgcaataaatataaaattgatgatattttttatgatacactttccttttgcttgtagtttataaactatgccacttctatag |
35590708 |
T |
|
| Q |
516 |
actacattaagatacaccatatagatatttggctacaagaattcaaagggaattaccatataggttatataggcagttattgcatgaatgtctattattg |
615 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
35590707 |
actacattaagatacactatatagatatttggctacaagaattcaaagggaattaccatataggtta----------tattgcatgaatgtctattattg |
35590618 |
T |
|
| Q |
616 |
agatcctgatatgtgtctgactaaaacatcctgttctcagggttaaaaacagttcatgtttatgtgagg-nnnnnnnnncattacttgtctatgtaattc |
714 |
Q |
| |
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|||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35590617 |
agatcctgatgtgtgtcagactaaaacatcctgttctcaaggttaaaaacagttcatgtttatgtgaggttttttttttcattacttgtctatgtaattc |
35590518 |
T |
|
| Q |
715 |
acttcaacatgaaagtttaaccattaaattcttatttgtaacagatgcttcaatgacatcctcatttttgaaggcctgtttctcatgtggggaagaccca |
814 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35590517 |
acttcaacatgaaagtttaaccatgaaattcttatttgtaacagatgcttcaatgacatcctcatttttgaaggcctgtttctcatgtggggaagaccca |
35590418 |
T |
|
| Q |
815 |
agtcaagttccagaaggtattttatcgttcc |
845 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
35590417 |
agtcaagttccagaaggtattttatcgttcc |
35590387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 96 - 216
Target Start/End: Original strand, 38046485 - 38046605
Alignment:
| Q |
96 |
cctaaggacttctttgcaagcatgaaagaaattgaatctctctttgtcagagcatctgaatctggcaaagaggttccaagaatgcttgaagcaaataagt |
195 |
Q |
| |
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|||||| | |||||| |||||||||| || |||||| ||||||| ||||| || || |||||||||||||||||||| ||||||||||| ||||| | |
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| T |
38046485 |
cctaagaatttcttttcaagcatgaaggatattgaagttctctttaatagagcttcggattctggcaaagaggttccaaggatgcttgaagccaataaat |
38046584 |
T |
|
| Q |
196 |
tgcactttcgtcctatatttc |
216 |
Q |
| |
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| |||||||| || ||||||| |
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| T |
38046585 |
ttcactttcgaccgatatttc |
38046605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 785 - 833
Target Start/End: Original strand, 38046734 - 38046782
Alignment:
| Q |
785 |
aaggcctgtttctcatgtggggaagacccaagtcaagttccagaaggta |
833 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38046734 |
aaggcatgtttctcatgtggggaagacccaagtcaagttccagaaggta |
38046782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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