View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11496_low_2 (Length: 305)

Name: NF11496_low_2
Description: NF11496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11496_low_2
NF11496_low_2
[»] chr3 (1 HSPs)
chr3 (17-305)||(38919106-38919394)


Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 17 - 305
Target Start/End: Original strand, 38919106 - 38919394
Alignment:
Q  17 aggaatcccttacatagaaacaaaaatcacaaactacaatctcaaagacattattcaaaatccaatcccaaatgaactcaaccgtttgattccatttcaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38919106 aggaatcccttacatagaaacaaaaatcacaaactacaatctcaaagacattattcaaaatccaatcccaaatgaactcaaccgtttgattccatttcaa 38919205  T
Q  117 cttgacgatatcacaaacatcgcttttggtattcaactcaannnnnnnagctgtggtggaattgcaatcggtgcttgtctttcacatcaaatagctgatg 216  Q
    |||||||||||||||||||||||||| ||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38919206 cttgacgatatcacaaacatcgctttcggtattcaactcaatttttttagctgtggtggaattgcaatcggtgcttgtctttcacatcaaatagctgatg 38919305  T
Q  217 gtttatcatttttcaatttcctcaatagttgggcaaatattactagaaaattgatttttccaaaacctatttttgattcttctaagctt 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38919306 gtttatcatttttcaatttcctcaatagttgggcaaatattactagaaaattgatttttccaaaacctatttttgattcttctaagctt 38919394  T

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