View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11497_low_11 (Length: 280)
Name: NF11497_low_11
Description: NF11497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11497_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 16 - 272
Target Start/End: Original strand, 11105411 - 11105667
Alignment:
| Q |
16 |
agtatcaaatttggctggagagatatctttgcttgctggtttgttcctgtggattgcaaccattccaagaattaggagaaaattctttgagctcnnnnnn |
115 |
Q |
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| T |
11105411 |
agtatcaaatttggctggagagatatctttgcttgctggtttgttcctgtggattgcaaccattccaagaattaggagaaaattctttgagctctttttt |
11105510 |
T |
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| Q |
116 |
nacacacatcacctctacataatcttcatcatcttctacatatttcatgttgacatttccttttccttcactatgctccctagtttctacctcttcttgg |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11105511 |
tacacacatcacctctacataatcttcatcatcttctacatatttcatgttgacatttccttttccttcactatgctccctagtttttacctcttcttgg |
11105610 |
T |
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| Q |
216 |
ttgatcgtttcctaaggttcttacaatctaggcgcggtgttcgtttggtttcatctc |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11105611 |
ttgatcgtttcctaaggttcttacaatctaggcgcggtgttcgtttgctttcatctc |
11105667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 16 - 272
Target Start/End: Original strand, 11591887 - 11592143
Alignment:
| Q |
16 |
agtatcaaatttggctggagagatatctttgcttgctggtttgttcctgtggattgcaaccattccaagaattaggagaaaattctttgagctcnnnnnn |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11591887 |
agtatcaaatttggctggagagatatctttgcttgctggtttgttcctgtggattgcaaccattccaagaattaggagaaaattctttgagctctttttt |
11591986 |
T |
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| Q |
116 |
nacacacatcacctctacataatcttcatcatcttctacatatttcatgttgacatttccttttccttcactatgctccctagtttctacctcttcttgg |
215 |
Q |
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| T |
11591987 |
tacacacatcacctctacataatcttcatcatcttctacatatttcatgttgacatttccttttccttcactatgctccctagtttctacctcttcttgg |
11592086 |
T |
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| Q |
216 |
ttgatcgtttcctaaggttcttacaatctaggcgcggtgttcgtttggtttcatctc |
272 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
11592087 |
ttgatcgtttcctaaggttcttacaatcaaggcgcggagttcgtttggtttcatctc |
11592143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 16 - 272
Target Start/End: Original strand, 11118587 - 11118843
Alignment:
| Q |
16 |
agtatcaaatttggctggagagatatctttgcttgctggtttgttcctgtggattgcaaccattccaagaattaggagaaaattctttgagctcnnnnnn |
115 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| || | ||| ||||||||||||| ||||||||||||| ||||||||| |
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| T |
11118587 |
agtatcaaatgtggctggagagatatctttgcttgctggtttagtcttatgggttgcaaccattccttacattaggagaaaatactttgagctatttttc |
11118686 |
T |
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| Q |
116 |
nacacacatcacctctacataatcttcatcatcttctacatatttcatgttgacatttccttttccttcactatgctccctagtttctacctcttcttgg |
215 |
Q |
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|||| ||| |||||||||| |||||||||||||||| ||| |||||||||| |||||||||| ||| || |||||||||| |||||||||||||||||| |
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| T |
11118687 |
tacactcattacctctacattatcttcatcatcttcttcatctttcatgttggcatttcctttgcctgcattatgctccctggtttctacctcttcttgg |
11118786 |
T |
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| Q |
216 |
ttgatcgtttcctaaggttcttacaatctaggcgcggtgttcgtttggtttcatctc |
272 |
Q |
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||||||||| |||| ||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
11118787 |
ttgatcgttacctacggttcctacaatctaggcgcgaagttcgtttggtttcatctc |
11118843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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