View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11497_low_12 (Length: 261)
Name: NF11497_low_12
Description: NF11497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11497_low_12 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 7 - 114
Target Start/End: Original strand, 39253931 - 39254038
Alignment:
| Q |
7 |
ataacttgtataagcattgacagggagtgtagaatgaatagagaatagtcttcttatggttataggtgggagggaaaccaaggaaaatcacaatcccaaa |
106 |
Q |
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| T |
39253931 |
ataacttgtataagcattgacagggagtgtagaatgaatagagaatagtcttcttatggttataggtgggagggaaaccaaggaaaatcacaatcccaaa |
39254030 |
T |
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| Q |
107 |
ccattctc |
114 |
Q |
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| T |
39254031 |
ccattctc |
39254038 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 261
Target Start/End: Original strand, 40124268 - 40124302
Alignment:
| Q |
227 |
agtcactttgatccttgaatgtgtaacgagtagtc |
261 |
Q |
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| T |
40124268 |
agtcactttggtccttgaatgtgtaacgagtagtc |
40124302 |
T |
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