View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11497_low_15 (Length: 250)
Name: NF11497_low_15
Description: NF11497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11497_low_15 |
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| [»] scaffold0376 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 20478275 - 20478521
Alignment:
| Q |
1 |
tcaagtttgatccttttcaagtaaatctgaaatatctggccacgacccttaatgtcgggtttatcaattgttatttggcggtcaaaacgccccggtctaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20478275 |
tcaagtttgatccttttcaagtaaatctgaaatatctggtcacgacccttaatgtcgggtttatcaattgttatttggcggtcaaaacgccccggtctaa |
20478374 |
T |
|
| Q |
101 |
gtaaggctttgtctaatacatcaggtctatttgtacctgcgagcacgacaactccagcagtagttccaaaaccatccatctccaccaacaattgatttaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
20478375 |
gtaaggctttgtctaatacatcaggtctatttgtacctgcgagcacgacaactccagcagtaggtccaaaaccatccatctccaccaacaattgatttaa |
20478474 |
T |
|
| Q |
201 |
agtactttcacgctcatcatttgcagcacctccgcctatgctactcc |
247 |
Q |
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||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
20478475 |
agtactttcacgctcatcatttgcagcacctccgcctctactactcc |
20478521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 38513756 - 38513980
Alignment:
| Q |
1 |
tcaagtttgatccttttcaagtaaatctgaaatatctggccacgacccttaatgtcgggtttatcaattgttatttggcggtcaaaacgccccggtctaa |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||| ||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38513756 |
tcaagtttgatccctttcaagtaaatctgaaatatctggtcacgacctttgatgtcaggtttatcaattgttatttggcggtcaaaacgccccggtctaa |
38513855 |
T |
|
| Q |
101 |
gtaaggctttgtctaatacatcaggtctatttgtacctgcgagcacgacaactccagcagtagttccaaaaccatccatctccaccaacaattgatttaa |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38513856 |
gtagggctttgtctaatacatcaggtctatttgtacctgccagcacaacaactccagcagtggttccaaaaccatccatctccaccaacaattgatttaa |
38513955 |
T |
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| Q |
201 |
agtactttcacgctcatcatttgca |
225 |
Q |
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|||||||||||| |||||||||||| |
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| T |
38513956 |
agtactttcacgttcatcatttgca |
38513980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 29728660 - 29728440
Alignment:
| Q |
3 |
aagtttgatccttttcaagtaaatctgaaatatctggccacgacccttaatgtcgggtttatcaattgttatttggcggtcaaaacgccccggtctaagt |
102 |
Q |
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|||||||||| | |||||||||||||||||||||||| ||||||| || |||||||||||||||| |||||||||||| || |||||||| || || || |
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| T |
29728660 |
aagtttgatcttgttcaagtaaatctgaaatatctggtcacgacctttgatgtcgggtttatcaactgttatttggcgatcgaaacgcccaggcctgagc |
29728561 |
T |
|
| Q |
103 |
aaggctttgtctaatacatcaggtctatttgtacctgcgagcacgacaactccagcagtagttccaaaaccatccatctccaccaacaattgatttaaag |
202 |
Q |
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| ||||| ||||||| |||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29728560 |
agagctttatctaatatatcaggtctattcgtacctgcaagcacaacaactccagcagtggttccaaaaccatccatctccaccaacaattgatttaaag |
29728461 |
T |
|
| Q |
203 |
tactttcacgctcatcatttg |
223 |
Q |
| |
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||| |||||||||||||||| |
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| T |
29728460 |
tacgatcacgctcatcatttg |
29728440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 24004259 - 24004037
Alignment:
| Q |
1 |
tcaagtttgatccttttcaagtaaatctgaaatatctggccacgacccttaatgtcgggtttatcaattgttatttggcggtcaaaacgccccggtctaa |
100 |
Q |
| |
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||||||||||| ||||||| |||||||||||||||||| ||||||| |||||||||||| |||||||| ||| ||||||||||||||| || |||| |
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| T |
24004259 |
tcaagtttgatttttttcaaataaatctgaaatatctggtcacgacctttaatgtcgggtacatcaattgatatcgtgcggtcaaaacgcccaggcctaa |
24004160 |
T |
|
| Q |
101 |
gtaaggctttgtctaatacatcaggtctatttgtacctgcgagcacgacaactccagcagtagttccaaaaccatccatctccaccaacaattgatttaa |
200 |
Q |
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||||||| |||||||||| ||||| ||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
24004159 |
gtaaggcgttgtctaatatatcagctctatttgtacctgcaagcacaacaactccagcagtggttccaaaaccatccatttccaccaacaattgatttaa |
24004060 |
T |
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| Q |
201 |
agtactttcacgctcatcatttg |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
24004059 |
agtactttcacgctcatcatttg |
24004037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0376 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 3185 - 2971
Alignment:
| Q |
1 |
tcaagtttgatccttttcaagtaaatctgaaatatctggccacgacccttaatgtcgggtttatcaattgttatttggcggtcaaaacgccccggtctaa |
100 |
Q |
| |
|
||||||||||| || ||||||||||| ||||||||||| | ||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
3185 |
tcaagtttgattctgttcaagtaaatttgaaatatctgatcgcgacctttgatgtcgggtttgtcaattgttatttggcggtcaaaacgccctggtctaa |
3086 |
T |
|
| Q |
101 |
gtaaggctttgtctaatacatcaggtctatttgtacctgcgagcacgacaactccagcagtagttccaaaaccatccatctccaccaacaattgatttaa |
200 |
Q |
| |
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|| |||||||||||||||||||| |||||||||||| || ||||| |||||||||| ||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
3085 |
ctagggctttgtctaatacatcagctctatttgtaccagctagcacaacaactccagaagtggttccaaatccatccatctccaccaacaattgatttaa |
2986 |
T |
|
| Q |
201 |
agtactttcacgctc |
215 |
Q |
| |
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|||| |||||||||| |
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| T |
2985 |
agtattttcacgctc |
2971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 16838135 - 16837915
Alignment:
| Q |
3 |
aagtttgatccttttcaagtaaatctgaaatatctggccacgacccttaatgtcgggtttatcaattgttatttggcggtcaaaacgccccggtctaagt |
102 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||| ||||||| || ||||||||||||||| |||||||||||| || |||||||| | || || |
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| T |
16838135 |
aagtttgatcttgttcaagtaaatctgaaatatctggtcacgacctttgatgtcgggtttatcagctgttatttggcgatcgaaacgcccatgcctgagc |
16838036 |
T |
|
| Q |
103 |
aaggctttgtctaatacatcaggtctatttgtacctgcgagcacgacaactccagcagtagttccaaaaccatccatctccaccaacaattgatttaaag |
202 |
Q |
| |
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| ||||| ||||||| |||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
16838035 |
agagctttatctaatatatcaggtctattcgtacctgcaagcacaacaactccagcagtggttccaaaaccatccatctccaccaacaattgatttaaag |
16837936 |
T |
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| Q |
203 |
tactttcacgctcatcatttg |
223 |
Q |
| |
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||| ||||||||||||||||| |
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| T |
16837935 |
tacgttcacgctcatcatttg |
16837915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 68 - 159
Target Start/End: Complemental strand, 45284926 - 45284835
Alignment:
| Q |
68 |
ttgttatttggcggtcaaaacgccccggtctaagtaaggctttgtctaatacatcaggtctatttgtacctgcgagcacgacaactccagca |
159 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||| ||||| |||||||||||| |
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| T |
45284926 |
ttgttatttggaggtcaaaacgccccggcctaagtagggctttgtctaatacatcaggtctattggtacctgccagcacaacaactccagca |
45284835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 45284842 - 45284797
Alignment:
| Q |
180 |
ctccaccaacaattgatttaaagtactttcacgctcatcatttgca |
225 |
Q |
| |
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||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
45284842 |
ctccagcaacaattgatttaaagtactttcaccctcatcatttgca |
45284797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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