View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11497_low_17 (Length: 211)
Name: NF11497_low_17
Description: NF11497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11497_low_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 12 - 193
Target Start/End: Original strand, 44798157 - 44798338
Alignment:
| Q |
12 |
agcataggacgaaggaggatgttgcattttttgatgtacgtctgagagagaataataaagaagaagtaattatgaattatgatatttatagaagaaatta |
111 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
44798157 |
agcagaggacgaaggaggatgttgcattttttgatgtacgtctgagagagaataataaagaagaagcaattatgaattatgatatttaaagaagaaatta |
44798256 |
T |
|
| Q |
112 |
gtgataagtgtgaattggggcttagggtttgttgaatttctcaaaatccctaagcccccaattcacagcggaacacattatc |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44798257 |
gtgataagtgtgaattggggcttagggtttgttcaatttctcaaaatccctaagcccccaattcacagcggaacacattatc |
44798338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 19 - 169
Target Start/End: Complemental strand, 35161941 - 35161797
Alignment:
| Q |
19 |
gacgaaggaggatgttgcattttttgatgtacgtctgagagagaataataaagaagaagtaattatgaattatgatatttatagaagaaattagtgataa |
118 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35161941 |
gacgaaggaggatgttgcattttttgacatacgtctgagagagaataataaagaa------attatgaattatgatatttatagaagaaattagtgataa |
35161848 |
T |
|
| Q |
119 |
gtgtgaattggggcttagggtttgttgaatttctcaaaatccctaagcccc |
169 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
35161847 |
gtgtgaattggggcttagggtttgttcaattactcaaaatccctaagcccc |
35161797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 44631177 - 44631292
Alignment:
| Q |
12 |
agcataggacgaaggaggatgttgcattttttgatgtacgtctgagagagaataataaagaagaagtaattatgaattatgatatttatagaagaaatta |
111 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
44631177 |
agcagaggacgaaggaggatgttgcattttttgatgtacgtctgagagagaataataaagaagaagcaattatgaattatgatatttaaagaagaaatta |
44631276 |
T |
|
| Q |
112 |
gtgataagtgtgaatt |
127 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
44631277 |
gtgataagtgtgaatt |
44631292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 39840149 - 39840096
Alignment:
| Q |
114 |
gataagtgtgaattggggcttagggtttgttgaatttctcaaaatccctaagcc |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
39840149 |
gataagtgtgaattggggcttagggtttgttcaatttctcaaaatccctaagcc |
39840096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 86
Target Start/End: Complemental strand, 39840227 - 39840176
Alignment:
| Q |
35 |
gcattttttgatgtacgtctgagagagaataataaagaagaagtaattatga |
86 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
39840227 |
gcattttttgacgtacgtctgagagagaataagaaagaagaaccaattatga |
39840176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 39839889 - 39839849
Alignment:
| Q |
19 |
gacgaaggaggatgttgcattttttgatgtacgtctgagag |
59 |
Q |
| |
|
||||||||| ||||||||||||||||| || |||||||||| |
|
|
| T |
39839889 |
gacgaaggatgatgttgcattttttgaagtgcgtctgagag |
39839849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 86
Target Start/End: Complemental strand, 39845111 - 39845062
Alignment:
| Q |
35 |
gcattttttgatgtacgtctgagagagaataataaagaagaagtaattatga |
86 |
Q |
| |
|
|||||||||||||||||||| || ||||||| |||||||||| |||||||| |
|
|
| T |
39845111 |
gcattttttgatgtacgtct--gaaagaataagaaagaagaagcaattatga |
39845062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University