View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11497_low_3 (Length: 448)

Name: NF11497_low_3
Description: NF11497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11497_low_3
NF11497_low_3
[»] chr2 (16 HSPs)
chr2 (22-237)||(11118085-11118300)
chr2 (306-440)||(11118393-11118527)
chr2 (19-233)||(11110078-11110292)
chr2 (310-440)||(11110447-11110577)
chr2 (36-199)||(11145246-11145409)
chr2 (304-440)||(10793748-10793884)
chr2 (25-199)||(11136936-11137110)
chr2 (36-199)||(11149180-11149343)
chr2 (19-233)||(10793995-10794209)
chr2 (36-233)||(11104100-11104297)
chr2 (36-199)||(11155563-11155726)
chr2 (337-399)||(11097393-11097455)
chr2 (339-403)||(11172382-11172446)
chr2 (234-265)||(11118352-11118383)
chr2 (336-382)||(11178531-11178577)
chr2 (102-199)||(11177243-11177340)


Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 22 - 237
Target Start/End: Original strand, 11118085 - 11118300
Alignment:
Q  22 atttatgattgaatcagggttgtgatgcatcagttttgttgaataaaacttctactattgcgagtgaacaagatgctggtccaaatataaactccttaag 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11118085 atttatgattgaatcagggttgtgatgcatcagttttgttgaataaaacttctactattgcgagtgaacaagatgctggtccaaatataaactccttaag 11118184  T
Q  122 aagattggatgttatcaatcagattaaaactgaggtggaaaaagtttgtcctaataaagtttcttgtgctgatattctcacacttgcagctggagtatct 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11118185 aagattggatgttatcaatcagattaaaactgaggtggaaaaagtttgtcctaataaagtttcttgtgctgatattctcacacttgcagctggagtatct 11118284  T
Q  222 tcagttctggtaaata 237  Q
    ||||||||||||||||    
T  11118285 tcagttctggtaaata 11118300  T

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Target: chr2; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 306 - 440
Target Start/End: Original strand, 11118393 - 11118527
Alignment:
Q  306 tattcacagagtgggggtccaggttggatcgttccattgggaagaagggatagtctaacagcaaatcaatcccttgccaatagaaatcttccaggtccca 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11118393 tattcacagagtgggggtccaggttggatcgttccattgggaagaagggatagtctaacagcaaatcaatcccttgccaatagaaatcttccaggtccca 11118492  T
Q  406 gctccagtctagatcaacttaaatcttcctttgct 440  Q
    |||||||||||||||||||||||||||||||||||    
T  11118493 gctccagtctagatcaacttaaatcttcctttgct 11118527  T

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Target: chr2; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 11110078 - 11110292
Alignment:
Q  19 attatttatgattgaatcagggttgtgatgcatcagttttgttgaataaaacttctactattgcgagtgaacaagatgctggtccaaatataaactcctt 118  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| ||  | ||||||| ||||||||||||||||  ||||||||| ||||||||    
T  11110078 attatttatgattgaaacagggttgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactcctt 11110177  T
Q  119 aagaagattggatgttatcaatcagattaaaactgaggtggaaaaagtttgtcctaataaagtttcttgtgctgatattctcacacttgcagctggagta 218  Q
    |||| ||||||||||||||||||| || || ||| | |||||||||| ||| ||||||| ||||||||||||||||||||| ||||||||  ||||| ||    
T  11110178 aagaggattggatgttatcaatcaaatcaagactaaagtggaaaaagcttgccctaatagagtttcttgtgctgatattcttacacttgcgtctggaata 11110277  T
Q  219 tcttcagttctggta 233  Q
    ||||| |||||||||    
T  11110278 tcttctgttctggta 11110292  T

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Target: chr2; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 310 - 440
Target Start/End: Original strand, 11110447 - 11110577
Alignment:
Q  310 cacagagtgggggtccaggttggatcgttccattgggaagaagggatagtctaacagcaaatcaatcccttgccaatagaaatcttccaggtcccagctc 409  Q
    |||||| ||||||||||||||||   |||||| | ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||     
T  11110447 cacagactgggggtccaggttgggaggttccactaggaagaagggatagtctaacagcaaatcaatcccttgccaatcaaaatcttccaggtcccaactt 11110546  T
Q  410 cagtctagatcaacttaaatcttcctttgct 440  Q
    ||||||||||| |||||||||| ||||||||    
T  11110547 cagtctagatcgacttaaatctgcctttgct 11110577  T

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Target: chr2; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 36 - 199
Target Start/End: Original strand, 11145246 - 11145409
Alignment:
Q  36 cagggttgtgatgcatcagttttgttgaataaaacttctactattgcgagtgaacaagatgctggtccaaatataaactccttaagaagattggatgtta 135  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||  |||||||||||||||  |||||| | |||||| || ||| | |||||||||     
T  11145246 cagggttgtgatgcatcagttttgttgaataacactgctactattgtcagtgaacaagatgcttttccaaacagaaactcattgagaggtttggatgttg 11145345  T
Q  136 tcaatcagattaaaactgaggtggaaaaagtttgtcctaataaagtttcttgtgctgatattct 199  Q
    | ||||| || ||||| |  || ||||| | ||| ||||| | |||||||||||||||||||||    
T  11145346 tgaatcaaatcaaaacagcagtagaaaaggcttgccctaacacagtttcttgtgctgatattct 11145409  T

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Target: chr2; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 304 - 440
Target Start/End: Complemental strand, 10793884 - 10793748
Alignment:
Q  304 tatattcacagagtgggggtccaggttggatcgttccattgggaagaagggatagtctaacagcaaatcaatcccttgccaatagaaatcttccaggtcc 403  Q
    ||||||||||||||   ||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||| || |||  |||||||||||  ||    
T  10793884 tatattcacagagtaaaggtcccggttggatcgttccattgggaagaagggatagtctaacagcaaatcgaaccctcgcaaatcaaaatcttccagcccc 10793785  T
Q  404 cagctccagtctagatcaacttaaatcttcctttgct 440  Q
       || || ||||  ||||||||||||||||||||||    
T  10793784 tttcttcaatctaagtcaacttaaatcttcctttgct 10793748  T

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Target: chr2; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 25 - 199
Target Start/End: Original strand, 11136936 - 11137110
Alignment:
Q  25 tatgattgaatcagggttgtgatgcatcagttttgttgaataaaacttctactattgcgagtgaacaagatgctggtccaaatataaactccttaagaag 124  Q
    |||||||| | ||||||||||||||||||||||| ||||| ||||||  ||| |||| |||||||||||| |||   |||||||| |||||  || || |    
T  11136936 tatgattgtaacagggttgtgatgcatcagttttattgaacaaaactgataccattgtgagtgaacaagaagctttcccaaatatcaactctctacgagg 11137035  T
Q  125 attggatgttatcaatcagattaaaactgaggtggaaaaagtttgtcctaataaagtttcttgtgctgatattct 199  Q
     ||||||||| | ||||| || ||||| |  |||||||| | ||||||||| | |||||||||||||||||||||    
T  11137036 tttggatgttgtgaatcaaatcaaaacagcagtggaaaaggcttgtcctaacacagtttcttgtgctgatattct 11137110  T

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Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 36 - 199
Target Start/End: Original strand, 11149180 - 11149343
Alignment:
Q  36 cagggttgtgatgcatcagttttgttgaataaaacttctactattgcgagtgaacaagatgctggtccaaatataaactccttaagaagattggatgtta 135  Q
    |||||||||||||||||||||||  |||| ||||||  |||  ||| ||||||||||||||||  |||||| | |||||| |||||| | || ||||||     
T  11149180 cagggttgtgatgcatcagttttactgaacaaaactgataccgttgtgagtgaacaagatgcttttccaaacagaaactcattaagaggtttagatgttg 11149279  T
Q  136 tcaatcagattaaaactgaggtggaaaaagtttgtcctaataaagtttcttgtgctgatattct 199  Q
    | ||||| || ||||| |  |||||||| | ||||||||| | ||||||||| |||||||||||    
T  11149280 tgaatcaaatcaaaacagctgtggaaaaggcttgtcctaacacagtttcttgcgctgatattct 11149343  T

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Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 10794209 - 10793995
Alignment:
Q  19 attatttatgattgaatcagggttgtgatgcatcagttttgttgaataaaacttctactattgcgagtgaacaagatgctggtccaaatataaactcctt 118  Q
    |||||| || |||||| |||||||| ||||||||  ||||| |||| || ||| ||||||| | ||| |||| | | |||   |||||||| |||||| |    
T  10794209 attattaattattgaaacagggttgcgatgcatccattttgctgaacaacactgctactatcgtgagcgaactacaagctctcccaaatatcaactccat 10794110  T
Q  119 aagaagattggatgttatcaatcagattaaaactgaggtggaaaaagtttgtcctaataaagtttcttgtgctgatattctcacacttgcagctggagta 218  Q
    |||| | ||| | ||| | ||||  || || || || |||||||||| ||| ||||||| |||||||||||||||||||||  ||||||| ||| || ||    
T  10794109 aagaggtttgcaagttgtgaatcgtatcaagacagacgtggaaaaagcttgccctaatacagtttcttgtgctgatattcttgcacttgctgctagaata 10794010  T
Q  219 tcttcagttctggta 233  Q
    ||||| || ||||||    
T  10794009 tcttccgtcctggta 10793995  T

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Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 233
Target Start/End: Original strand, 11104100 - 11104297
Alignment:
Q  36 cagggttgtgatgcatcagttttgttgaataaaacttctactattgcgagtgaacaagatgctggtccaaatataaactccttaagaagattggatgtta 135  Q
    ||||| ||||||| ||||||||||||||| || |||  ||| |||| |||||||||||||||   |||||| | |||||| ||||   | |||||||||     
T  11104100 cagggctgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaacaagatgcatttccaaacagaaactcattaaagcgtttggatgttg 11104199  T
Q  136 tcaatcagattaaaactgaggtggaaaaagtttgtcctaataaagtttcttgtgctgatattctcacacttgcagctggagtatcttcagttctggta 233  Q
    | ||| | || || || |  || ||| |||  |||||||| |  |||||||||||||||||||| ||  ||||||||| |||||||||  ||||||||    
T  11104200 tgaataaaatcaagacagcagttgaagaagaatgtcctaacactgtttcttgtgctgatattcttactattgcagctgaagtatcttctattctggta 11104297  T

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Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 199
Target Start/End: Original strand, 11155563 - 11155726
Alignment:
Q  36 cagggttgtgatgcatcagttttgttgaataaaacttctactattgcgagtgaacaagatgctggtccaaatataaactccttaagaagattggatgtta 135  Q
    ||||| |||||||| || ||||||||||| || ||| |||| || |  || |||||| | |||  ||||||||  ||||| |||||| | |||||||||     
T  11155563 cagggatgtgatgcctcggttttgttgaacaatactgctacgatcgtaagcgaacaacaagcttttccaaataacaactctttaagaggtttggatgttg 11155662  T
Q  136 tcaatcagattaaaactgaggtggaaaaagtttgtcctaataaagtttcttgtgctgatattct 199  Q
    | |||||||| |||||||   | ||||  | ||||||||| | |||||||||||||||||||||    
T  11155663 taaatcagatcaaaactgctatagaaagtgcttgtcctaacacagtttcttgtgctgatattct 11155726  T

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Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 399
Target Start/End: Original strand, 11097393 - 11097455
Alignment:
Q  337 ttccattgggaagaagggatagtctaacagcaaatcaatcccttgccaatagaaatcttccag 399  Q
    ||||||||||||||||||||||| |||||||||| ||| ||||||| |||  ||| |||||||    
T  11097393 ttccattgggaagaagggatagtttaacagcaaaccaagcccttgcaaatcaaaaccttccag 11097455  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 403
Target Start/End: Original strand, 11172382 - 11172446
Alignment:
Q  339 ccattgggaagaagggatagtctaacagcaaatcaatcccttgccaatagaaatcttccaggtcc 403  Q
    ||||| |||||||| |||||| |||||||||||| | ||||||| |||| |||||||||| ||||    
T  11172382 ccattaggaagaagagatagtttaacagcaaatctaacccttgctaatataaatcttccaagtcc 11172446  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 265
Target Start/End: Original strand, 11118352 - 11118383
Alignment:
Q  234 aataatggttgaatcaacttcttttatttatt 265  Q
    ||||||||||||||||||||||||||||||||    
T  11118352 aataatggttgaatcaacttcttttatttatt 11118383  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 11178531 - 11178577
Alignment:
Q  336 gttccattgggaagaagggatagtctaacagcaaatcaatcccttgc 382  Q
    |||||||| ||||||||||||||| ||||||||||| | ||||||||    
T  11178531 gttccattaggaagaagggatagtttaacagcaaataattcccttgc 11178577  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 199
Target Start/End: Original strand, 11177243 - 11177340
Alignment:
Q  102 ccaaatataaactccttaagaagattggatgttatcaatcagattaaaactgaggtggaaaaagtttgtcctaataaagtttcttgtgctgatattct 199  Q
    |||||||  |||||| ||||| | ||||| || || || ||||| ||||| | ||||||||| | ||||||||| |  ||||||||||||||||||||    
T  11177243 ccaaataacaactccataagaggtttggacgtgataaaccagatcaaaacagcggtggaaaatgcttgtcctaacactgtttcttgtgctgatattct 11177340  T

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