View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11497_low_5 (Length: 406)
Name: NF11497_low_5
Description: NF11497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11497_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 396
Target Start/End: Complemental strand, 46479151 - 46478765
Alignment:
| Q |
18 |
cgtggctacggcgacaccgatgctcccgcttcaataagcagctacacaatcttccacttggtgggtgatatcgttgctctcatcgactcactcggcgttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46479151 |
cgtggctacggcgacaccgatgctcccgcttcaataagcagctacacaatcttccacttggtgggtgatatcgttgctctcatcgactcactcggcgttg |
46479052 |
T |
|
| Q |
118 |
accaagtgttccttgtagctcatgattggggtgccatgattggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgtctgtttgagtgt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
46479051 |
accaagtgttccttgtagctcatgattggggtgccatgattggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgtttgtttgagtgt |
46478952 |
T |
|
| Q |
218 |
gccgtatttacccagaaaccccaaagtgaaaccagttgatggcatgcgagctttgtttggagatgattactatatctgcagattccaggttcgttttctt |
317 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46478951 |
gccgtatttacccagaaaccccaaaatgaaaccagttgatggcatgcgagctttgtttggagatgattactatatctgcagattccaggttcgttttctt |
46478852 |
T |
|
| Q |
318 |
atattcttattc------ttatatgctacgaatcagttacagatgtgtttc--cacaaatttctgcttgaattattactcccctttg |
396 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
46478851 |
atattcttattcttattcttatatgctacgaatcagttacagatgtgtttctgcacaaatttctgcttgaattattactcccctttg |
46478765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 46490353 - 46490063
Alignment:
| Q |
18 |
cgtggctacggcgacaccgatgctcccgcttcaataagcagctacacaatcttccacttggtgggtgatatcgttgctctcatcgactcactcggcgttg |
117 |
Q |
| |
|
||||| || ||||||||||||||||| || || || || ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
46490353 |
cgtggttatggcgacaccgatgctccggcctccattagtagctacacaatcttccatttggttggtgacatcgttgctctcatcgactcacttggcgttg |
46490254 |
T |
|
| Q |
118 |
accaagtgttccttgtagctcatgattggggtgccatgattggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgtctgtttgagtgt |
217 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||| || || ||| ||||||| |
|
|
| T |
46490253 |
accgagtgtttcttgtagctcatgattggggtgccatcattggttggtatctttgtttgtttcgccctgaaagaatcaaagcctacgtgtgtctgagtgt |
46490154 |
T |
|
| Q |
218 |
gccgtatttacccagaaaccccaaagtgaaaccagttgatggcatgcgagctttgtttggagatgattactatatctgcagattccaggtt |
308 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| |||||||||||||||||| ||| ||| |||||||| ||||||||||||||||||||| |
|
|
| T |
46490153 |
tccgtatttacccagaaacccaaaattgaaacctgttgatggcatgcgagctgtgtatggtgatgattattatatctgcagattccaggtt |
46490063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 46520581 - 46520292
Alignment:
| Q |
18 |
cgtggctacggcgacaccgatgctcccgcttcaataagcagctacacaatcttccacttggtgggtgatatcgttgctctcatcgactcactcggcgttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46520581 |
cgtggctacggcgacaccgatgctcccgcttcaataagcagctacacaatcttccacttggtgggtgatatcgttgctctcatcgactcactcggcgttg |
46520482 |
T |
|
| Q |
118 |
accaagtgttccttgtagctcatgattggggtgccatgattggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgtctgtttgagtgt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||| ||||| ||| | ||||| |
|
|
| T |
46520481 |
accaagtgttccttgtagctcatgattggggtgccatgattggttggtatctttgcatgtttcgccctgaaagaatcaaagcctatgtttgtcttagtgt |
46520382 |
T |
|
| Q |
218 |
gccgtatttaccc--agaaaccccaaagtgaaaccagttgatggcatgcgagctttgtttggagatgattactatatctgcagattccaggt |
307 |
Q |
| |
|
|| ||||| || |||||||||| |||||| || ||||||| | ||| ||| | |||||| ||||| |||||||||||||| ||||| |
|
|
| T |
46520381 |
tcc--atttaaccatagaaaccccacagtgaagcctattgatggtaggcgtgctgcttatggagacgattattatatctgcagatttcaggt |
46520292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 63 - 327
Target Start/End: Complemental strand, 46494606 - 46494342
Alignment:
| Q |
63 |
acaatcttccacttggtgggtgatatcgttgctctcatcgactcactcggcgttgaccaagtgttccttgtagctcatgattggggtgccatgattggtt |
162 |
Q |
| |
|
||||||||||||||||| ||||| || ||||| ||||||||||| || || ||||| ||||| |||||||| |||||||||||||||||||| |||||| |
|
|
| T |
46494606 |
acaatcttccacttggttggtgacattgttgcgctcatcgactcgcttggggttgatcaagtcttccttgtggctcatgattggggtgccatcgttggtt |
46494507 |
T |
|
| Q |
163 |
ggtatctttgtttatttcgccctgaaaaaatcaaagcttatgtctgtttgagtgtgccgtatttacccagaaaccccaaagtgaaaccagttgatggcat |
262 |
Q |
| |
|
|||||||||| || ||||||||||| | | | ||||| ||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46494506 |
ggtatctttgcttgtttcgccctgagagagttaaagcctatgtgtgtctcagtgtgccgtatttacccagaaaccccaaagtgaaaccagttgatggcat |
46494407 |
T |
|
| Q |
263 |
gcgagctttgtttggagatgattactatatctgcagattccaggttcgttttcttatattcttat |
327 |
Q |
| |
|
||||||||| ||||||||||| || ||||||||||||||||||||||| ||| |||||| |||| |
|
|
| T |
46494406 |
gcgagctttatttggagatgactattatatctgcagattccaggttcgaattcatatatttttat |
46494342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 46516939 - 46516644
Alignment:
| Q |
19 |
gtggctacggcgacaccgatgctcccgcttcaataagcagctacacaatcttccacttggtgggtgatatcgttgctctcatcgactcactcggcgttga |
118 |
Q |
| |
|
|||||||||| ||||| ||||||||| ||||| | || ||||||||||| || || ||||| ||||||||||||||||| || |||||||| || || || |
|
|
| T |
46516939 |
gtggctacggtgacactgatgctcccacttcagttagtagctacacaattttacatttggttggtgatatcgttgctctaattgactcactgggtgtgga |
46516840 |
T |
|
| Q |
119 |
ccaagtgttccttgtagctcatgattggggtgccatgattggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgtctgtttgagtgtg |
218 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||| || |||||||||||||||||||| ||||| ||||| ||| |||| |||||||| || | ||||| |
|
|
| T |
46516839 |
ccaagttttccttgtggctcatgattggggtgctatcattggttggtatctttgtttgtttcgtcctgagaaagtcaaggcttatgtttgcctcagtgtt |
46516740 |
T |
|
| Q |
219 |
ccgtatttacccagaaaccccaaagtgaaaccagttgatggcatgcgagctttgtttggagatgattactatatctgcagattccaggttcgtttt |
314 |
Q |
| |
|
|| | ||||| |||||||||||||| ||||| ||||||||||||| |||||||||||| || ||||| ||||||||||||||||||||| ||||| |
|
|
| T |
46516739 |
ccattgttaccaagaaaccccaaagtaaaacctgttgatggcatgcaagctttgtttggtgacgattattatatctgcagattccaggtttgtttt |
46516644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 17 - 309
Target Start/End: Original strand, 46322911 - 46323203
Alignment:
| Q |
17 |
acgtggctacggcgacaccgatgctcccgcttcaataagcagctacacaatcttccacttggtgggtgatatcgttgctctcatcgactcactcggcgtt |
116 |
Q |
| |
|
||||||||| || ||||| || ||||| |||||||||||||||||||| || ||| | || |||||| | ||||| || || || | || |||||| |
|
|
| T |
46322911 |
acgtggctatggtgacactgaggctccatcttcaataagcagctacacaggttttcacattgtaggtgatctggttgcacttatagatttgcttggcgtt |
46323010 |
T |
|
| Q |
117 |
gaccaagtgttccttgtagctcatgattggggtgccatgattggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgtctgtttgagtg |
216 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||||| ||||||||||| ||||| | ||||||||||||| ||||||||| ||||| ||| | |||| |
|
|
| T |
46323011 |
gatcaagtgtttcttgtagctcatgattggggtgccatcattggttggtacctttgcatgtttcgccctgaaagaatcaaagcctatgtttgtctcagtg |
46323110 |
T |
|
| Q |
217 |
tgccgtatttaccc--agaaaccccaaagtgaaaccagttgatggcatgcgagctttgtttggagatgattactatatctgcagattccaggttc |
309 |
Q |
| |
|
| || |||||| | |||||||| ||| | | | | |||||||||||||| ||| | |||||||||||| ||||||| ||||| ||||||| |
|
|
| T |
46323111 |
ttcc--atttacgcgtagaaaccctaaaatcagaactgttgatggcatgcgtgctgcttatggagatgattattatatctctagatttcaggttc |
46323203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 114 - 209
Target Start/End: Complemental strand, 46532104 - 46532009
Alignment:
| Q |
114 |
gttgaccaagtgttccttgtagctcatgattggggtgccatgattggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgtctgt |
209 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||| || |||||||||||||||||| | ||||||||||||| ||||||||||||||||||| |
|
|
| T |
46532104 |
gttgaccaagtgtttcttgtggctcatgattggggtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagcttatgtctgt |
46532009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 114 - 209
Target Start/End: Complemental strand, 46524551 - 46524456
Alignment:
| Q |
114 |
gttgaccaagtgttccttgtagctcatgattggggtgccatgattggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgtctgt |
209 |
Q |
| |
|
||||| |||||||| ||||| ||||||||||||||||| || |||||||||||||||||| | ||||||||||||| ||||||||||||||||||| |
|
|
| T |
46524551 |
gttgatcaagtgtttcttgttgctcatgattggggtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagcttatgtctgt |
46524456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 57 - 205
Target Start/End: Complemental strand, 46464985 - 46464839
Alignment:
| Q |
57 |
agctacacaatcttccacttggtgggtgatatcgttgctctcatcgactcactcggcgttgaccaagtgttccttgtagctcatgattggggtgccatga |
156 |
Q |
| |
|
|||||||||||||||||||| || ||||| |||||||||||||| |||||||| || ||||| ||||| || |||| |||||||||||||||||| | | |
|
|
| T |
46464985 |
agctacacaatcttccacttagttggtgacatcgttgctctcatagactcacttggggttgatcaagtcttttttgttgctcatgattggggtgccttaa |
46464886 |
T |
|
| Q |
157 |
ttggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgt |
205 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||| | ||||||| ||||| |
|
|
| T |
46464885 |
ctggttggtatc--tgtttgtttcgtcctgaaagagtcaaagcctatgt |
46464839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 46326617 - 46326804
Alignment:
| Q |
18 |
cgtggctacggcgacaccgatgctcccgcttcaataagcagctacacaatcttccacttggtgggtgatatcgttgctctcatcgactcactcggcgttg |
117 |
Q |
| |
|
|||||||| || ||||| |||| ||| |||| || |||||||||||| || ||| | || ||||| || ||| |||||||||||| || || || | |
|
|
| T |
46326617 |
cgtggctatggtgacacagatgttccgtcttccattagcagctacacatgttttcacgtagttggtgacattgtttctctcatcgacttgcttggtgtgg |
46326716 |
T |
|
| Q |
118 |
accaagtgttccttgtagctcatgattggggtgccatgattggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgt |
205 |
Q |
| |
|
| ||||| |||||||| | ||||||| ||||||||| |||||||||||||||||| | ||||||||||||| ||||||||| ||||| |
|
|
| T |
46326717 |
aacaagttttccttgttggtcatgatatgggtgccatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagcctatgt |
46326804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 7475371 - 7475558
Alignment:
| Q |
18 |
cgtggctacggcgacaccgatgctcccgcttcaataagcagctacacaatcttccacttggtgggtgatatcgttgctctcatcgactcactcggcgttg |
117 |
Q |
| |
|
|||||||| || ||||||||| |||| |||||||||||||||||||| || || |||| ||||| | ||||| || || || | || || |||| |
|
|
| T |
7475371 |
cgtggctatggtgacaccgattctccatcttcaataagcagctacacagggtttcatatggttggtgaccttgttgcacttatagattttcttggtgttg |
7475470 |
T |
|
| Q |
118 |
accaagtgttccttgtagctcatgattggggtgccatgattggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgt |
205 |
Q |
| |
|
| |||||||| ||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||||| ||||||||| ||||| |
|
|
| T |
7475471 |
atcaagtgtttcttgtggctcatgattggggtgccatcattggttggtacctttgcacgtttcgccctgaaagaatcaaagcctatgt |
7475558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 172
Target Start/End: Original strand, 88263 - 88357
Alignment:
| Q |
78 |
gtgggtgatatcgttgctctcatcgactcactcggcgttgaccaagtgttccttgtagctcatgattggggtgccatgattggttggtatctttg |
172 |
Q |
| |
|
|||||||||||| |||| ||||| ||||| || || || ||| |||||| |||||| | |||||||||||||| || || ||||||||| |||| |
|
|
| T |
88263 |
gtgggtgatatcattgcactcattgactctctaggggtggacaaagtgtaccttgtcggacatgattggggtgcaatcatcggttggtatgtttg |
88357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 172
Target Start/End: Complemental strand, 37151967 - 37151873
Alignment:
| Q |
78 |
gtgggtgatatcgttgctctcatcgactcactcggcgttgaccaagtgttccttgtagctcatgattggggtgccatgattggttggtatctttg |
172 |
Q |
| |
|
|||||||||||| |||| ||||| ||||| || || || ||| |||||| |||||| | |||||||||||||| || || ||||||||| |||| |
|
|
| T |
37151967 |
gtgggtgatatcattgcactcattgactctctaggggtggacaaagtgtaccttgtcggacatgattggggtgcaatcatcggttggtatgtttg |
37151873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University