View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11497_low_9 (Length: 303)
Name: NF11497_low_9
Description: NF11497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11497_low_9 |
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| [»] scaffold0376 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 293
Target Start/End: Original strand, 20477875 - 20478151
Alignment:
| Q |
17 |
accaccaagggtcatacaagtcctatcgaaaagctgctcctttgtcatgagatggtcgtcatttggaacaaactgggcaaacccaagagccgctgttcca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20477875 |
accaccaagggtcatacaagtcctatcgaaaagctgctcctttgtcatgagatggtcgtcatttggaacaaactgggcaaacccaagagccgctgttcca |
20477974 |
T |
|
| Q |
117 |
cgaggaacaatagttactttcaacaatggctcagtatgttccaagaaccaacccgcaacaacatggcccgcttcatggtaagcaacggtacgtctatcct |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20477975 |
cgaggaacaatagttactttcaacaatggctcagtatgttccaagaaccaacccgcaacaacatggcccgcttcatggtaagcaacggtacgtctatcct |
20478074 |
T |
|
| Q |
217 |
tcttgcttattaccttgttcttcttctccaaaccaccaatgatcctatcaatagctgcctcaaaatgatcctctgtg |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20478075 |
tcttgcttattaccttgttcttcttctccaaaccaccaatgatcctatcaatagctgcctcaaaatgatcctctgtg |
20478151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 286
Target Start/End: Original strand, 38513356 - 38513625
Alignment:
| Q |
17 |
accaccaagggtcatacaagtcctatcgaaaagctgctcctttgtcatgagatggtcgtcatttggaacaaactgggcaaacccaagagccgctgttcca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||| ||| |||||||||||| ||||||||||||||||||||| |||||| |
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| T |
38513356 |
accaccaagggtcatacaagtcctatcgaaaagttgttcctttgtcatgagaaggttctcatttggaacatactgggcaaacccaagagccgatgttccg |
38513455 |
T |
|
| Q |
117 |
cgaggaacaatagttactttcaacaatggctcagtatgttccaagaaccaacccgcaacaacatggcccgcttcatggtaagcaacggtacgtctatcct |
216 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||| || ||||||||||||||||| || ||||| | | |
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| T |
38513456 |
cgaggaacaatagttactttcaacaatgggtcagtatgttccaagaaccaacctgcaacagcatgacctgcttcatggtaagcaacagtgcgtctttgca |
38513555 |
T |
|
| Q |
217 |
tcttgcttattaccttgttcttcttctccaaaccaccaatgatcctatcaatagctgcctcaaaatgatc |
286 |
Q |
| |
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||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38513556 |
gcttacttattaccctgttcttcttctccaaaccaccaatgatcctatcaatagctgcctcgaaatgatc |
38513625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 17 - 287
Target Start/End: Complemental strand, 29729062 - 29728792
Alignment:
| Q |
17 |
accaccaagggtcatacaagtcctatcgaaaagctgctcctttgtcatgagatggtcgtcatttggaacaaactgggcaaacccaagagccgctgttcca |
116 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||| |||||||||||| ||| ||||||| |||| |||| |||||||||||||| |||||||| |
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| T |
29729062 |
accaccaagggtcatacaagtcctatcaaaaagttgctcttttgtcatgagaaggttctcatttgaaacatactgcgcaaacccaagagctgctgttccg |
29728963 |
T |
|
| Q |
117 |
cgaggaacaatagttactttcaacaatggctcagtatgttccaagaaccaacccgcaacaacatggcccgcttcatggtaagcaacggtacgtctatcct |
216 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||| ||||| |||||||||| ||||| || |||| |
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| T |
29728962 |
cgaggaacaatagttactttcaataatggctcggtatgttccaagaaccaaccaacaacagcatggcctgcttcgtggtaagcaattgtacgcctttcct |
29728863 |
T |
|
| Q |
217 |
tcttgcttattaccttgttcttcttctccaaaccaccaatgatcctatcaatagctgcctcaaaatgatcc |
287 |
Q |
| |
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||| ||||||||| |||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||| |
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| T |
29728862 |
gcttacttattacccggttcttcttctctaaaccgccaatgattctatcaatagctgcctcgaaatgatcc |
29728792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 17 - 293
Target Start/End: Complemental strand, 45285351 - 45285077
Alignment:
| Q |
17 |
accaccaagggtcatacaagtcctatcgaaaagctgctcctttgtcatgagatggtcgtcatttggaacaaactgggcaaacccaagagccgctgttcca |
116 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| || ||||||||| |||| |||||||||||||| |||||||| |
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| T |
45285351 |
accaccaagggtcatacaagtcctatcaaaaagctgctc--ttgtcatgagatggttctcgtttggaacatactgcgcaaacccaagagctgctgttcct |
45285254 |
T |
|
| Q |
117 |
cgaggaacaatagttactttcaacaatggctcagtatgttccaagaaccaacccgcaacaacatggcccgcttcatggtaagcaacggtacgtctatcct |
216 |
Q |
| |
|
||||||||||||||||||||||| ||||| | ||||||||||||||||||||| |||||| |||| || |||||||||||||||||||| || || | || |
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| T |
45285253 |
cgaggaacaatagttactttcaaaaatggattagtatgttccaagaaccaacctgcaacagcatgacctgcttcatggtaagcaacggttcgcctgtgct |
45285154 |
T |
|
| Q |
217 |
tcttgcttattaccttgttcttcttctccaaaccaccaatgatcctatcaatagctgcctcaaaatgatcctctgtg |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
45285153 |
gcttgcttattaccttgttcttcttctccaaaccaccgatgatcctatcaatagctgcctcaaaatgatcctttgtg |
45285077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 17 - 287
Target Start/End: Complemental strand, 16838537 - 16838267
Alignment:
| Q |
17 |
accaccaagggtcatacaagtcctatcgaaaagctgctcctttgtcatgagatggtcgtcatttggaacaaactgggcaaacccaagagccgctgttcca |
116 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||| |||||||||||| ||| ||||||| |||| ||||||||||||||||||| |||||||| |
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| T |
16838537 |
accaccaagggtcatacaagtcctatcaaaaagttgctcttttgtcatgagaaggttctcatttgaaacatactgggcaaacccaagagctgctgttccg |
16838438 |
T |
|
| Q |
117 |
cgaggaacaatagttactttcaacaatggctcagtatgttccaagaaccaacccgcaacaacatggcccgcttcatggtaagcaacggtacgtctatcct |
216 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||| ||||| ||||||||||||||||| || |||| |
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|
| T |
16838437 |
cgaggaacaatagttactttcaataatggctcggtatgttccaagaaccaaccaacaacagcatggcctgcttcgtggtaagcaacggtacgcctttcct |
16838338 |
T |
|
| Q |
217 |
tcttgcttattaccttgttcttcttctccaaaccaccaatgatcctatcaatagctgcctcaaaatgatcc |
287 |
Q |
| |
|
||| |||||||| |||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
16838337 |
gcttacttattacacggttcttcttctctaaaccgccaatgattctatcaatagctgcctcgaaatgatcc |
16838267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0376 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 17 - 288
Target Start/End: Complemental strand, 3586 - 3314
Alignment:
| Q |
17 |
accaccaagggtcatacaagtcctatcgaaaagctgctcctttgtcatgagatggtcgtcatttggaacaaactgggcaaacccaagagccgctgttcca |
116 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||| ||||||||| ||| ||||||| | | |||||||||||||||||| ||||||| |
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| T |
3586 |
accaccaagggccatacaagtcctatcgaaaagttgctccttggtcatgagaaggttttcatttgacaaatactgggcaaacccaagagtttctgttccg |
3487 |
T |
|
| Q |
117 |
cgaggaacaatagttactttcaacaatggctcagtatgttccaagaaccaa-cccgcaacaacatggcccgcttcatggtaagcaacggtacgtctatcc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||| ||||| || ||| |
|
|
| T |
3486 |
cgaggaacaatagttactttcaacaatggctcagtatgttccaagaaccaaccccacaacaacatggcctgcttcatggtaagcaatagtacgcctttcc |
3387 |
T |
|
| Q |
216 |
ttcttgcttattaccttgttcttcttctccaaaccaccaatgatcctatcaatagctgcctcaaaatgatcct |
288 |
Q |
| |
|
| ||| ||||||||| ||||||||||||| ||||| ||||||| ||||||||| |||||||| |||||||||| |
|
|
| T |
3386 |
tgcttacttattaccatgttcttcttctctaaaccgccaatgaccctatcaatggctgcctcgaaatgatcct |
3314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 24005129 - 24004915
Alignment:
| Q |
17 |
accaccaagggtcatacaagtcctatcgaaaagctgctcctttgtcatgagatggtcgtcatttggaacaaactgggcaaacccaagagccgctgttcca |
116 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||||| ||||| ||| ||| |||||||| | |||||||||||||| || ||||| || |
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|
| T |
24005129 |
accaccaagggtcatacaagtcatatccaaaagctgctcctttgtcctgagaaggttctcacttggaacatattgggcaaacccaagtgctgctgtgccg |
24005030 |
T |
|
| Q |
117 |
cgaggaacaatagttactttcaacaatggctcagtatgttccaagaaccaacccgcaacaacatggcccgcttcatggtaagcaacggtacgtctatcct |
216 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||| ||||||| ||||||||||||||||| ||||| || ||| |
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|
| T |
24005029 |
cgaggaacaatggttactttcaacaatggctcacaatgttccaagaaccaacctgcaacagcatggcctgcttcatggtaagcaacagtacgcctttccc |
24004930 |
T |
|
| Q |
217 |
tcttgcttattacct |
231 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
24004929 |
gcttacttattacct |
24004915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 227 - 287
Target Start/End: Complemental strand, 24004449 - 24004389
Alignment:
| Q |
227 |
taccttgttcttcttctccaaaccaccaatgatcctatcaatagctgcctcaaaatgatcc |
287 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
24004449 |
taccctgttcttcttctccaaaccaccaatgatcctatcgatagctgcctcgaaatgatcc |
24004389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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