View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11498_high_10 (Length: 325)
Name: NF11498_high_10
Description: NF11498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11498_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 8586740 - 8586444
Alignment:
| Q |
1 |
gatgcattgctcaagttaacatccatagctattccaagggcagtgaggacaaatgtgaaaggcaaaactagatataataaggccttgataaatttaaaca |
100 |
Q |
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| T |
8586740 |
gatgcattgctcaagttaacatccatagctattccaagggcagtgaggacaaatgtgaaaggcaaaactagatataataagtcc-tgataaatttaaaca |
8586642 |
T |
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| Q |
101 |
-aactgttattcaggatagaagttcggagagca--agagaggaatgaagtaaaaaccaagaaatatcgtggttgttgacaagcaaaatcaagaaactctg |
197 |
Q |
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| T |
8586641 |
gaaccgttattcgggatagaagttcggcgagcaagagagaggaaagaagtaaaaaccaagaaatatcgtggttgttgacaagcaaaa---------tctg |
8586551 |
T |
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| Q |
198 |
aggcctgtcaaaaattcatctgtatatcccgtttgaccagcaatgcaccggttatacatccatgtccaatgttccggtatttccaatttccactcaggtg |
297 |
Q |
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| T |
8586550 |
aggcctgtcaaaaattcatttgtatatcccgttcgaccagcaatgcaccggttatacatccatgtccaatgttccggtatttccaatttccactcaggtg |
8586451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 301
Target Start/End: Complemental strand, 8573078 - 8572933
Alignment:
| Q |
158 |
aaatatcgtggttgttgacaagcaaaatcaagaaactc--tgaggcctgtcaaaaattcatctgtatatcccgtttgaccagcaatgcaccggttataca |
255 |
Q |
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| T |
8573078 |
aaatattgtggttgttgacaagcaaaatcaagaaactctttgaggccttgcaaaaattcagctgtaaatccctttcgaccagtaatgcgcctattataca |
8572979 |
T |
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| Q |
256 |
tccatgtccaatgttccggtatttccaatttccactcaggtgcaaa |
301 |
Q |
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| T |
8572978 |
tccatgtacgatgttctggcacgtccattttcctctcagctgcaaa |
8572933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 5362497 - 5362432
Alignment:
| Q |
1 |
gatgcattgctcaagttaacatccatagctattccaagggcagtgaggacaaatgtgaaaggcaaa |
66 |
Q |
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| T |
5362497 |
gatgcattgctcaagttaacatccatagccgttccaagagcagtcgggacaactgtgaaaggcaaa |
5362432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 8579656 - 8579578
Alignment:
| Q |
165 |
gtggttgttgacaagcaaaatcaagaaactct--gaggcctgtcaaaaattcatctgtatatcccgtttgaccagcaat |
241 |
Q |
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| T |
8579656 |
gtggttgttgacaagcaaaatcaagaaactcttcaaggctttgcaaaaattcaactgtatatcgcctttgaccaccaat |
8579578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 8603002 - 8602947
Alignment:
| Q |
158 |
aaatatcgtggttgttgacaagcaaaatcaagaaactc--tgaggcctgtcaaaaa |
211 |
Q |
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| T |
8603002 |
aaatattgtggttgttgacaagcaaattcaagaaactctttgaggcctttcaaaaa |
8602947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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