View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11498_high_8 (Length: 347)
Name: NF11498_high_8
Description: NF11498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11498_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 11000638 - 11000309
Alignment:
| Q |
1 |
gtagagtttcccaaaagatccttgcgcaaaagcctcgcccatattcagcttcctcaaatcaatcgtccactcttgaaaattttcaagccctaccgttgga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
11000638 |
gtagagtttcccaaaagatccttgcgcaaaagcctcgcccatattcagcttcctcaaatcaatcgtccactcttcaaaattttcaagccctaccgtcgga |
11000539 |
T |
|
| Q |
101 |
gaactaaagtccatcagagcttgagctaaagcatcattactcaatgcatgagtgactcttccccgaagattggcgctgtgggcaaccgagtagttatcgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
11000538 |
gaactaaagtccatcagagcttgagctaaagcatcattactcaatgcatgagtgactcttccccgtagattggcgctttgggcaaccgagtagttatcgt |
11000439 |
T |
|
| Q |
201 |
tggcgtgccacttcaatccttggtgatccaacatgcgggtatgggaatcattggacccaacactgctgttattggtaccctcaccaaacatggtattact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11000438 |
tggcgtgccacttcaatccttggtgatccaacatgcgggtatgggaatcattggacccaacactgctgttattggtaccctcaccaaacatggtattact |
11000339 |
T |
|
| Q |
301 |
cttgttgagatctattggaaacattctttt |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
11000338 |
cttgttgagatctattggaaacattctttt |
11000309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 42403964 - 42404235
Alignment:
| Q |
1 |
gtagagtttcccaaaagatccttgcgcaaaagcctcgcccatattcagcttcctcaaatcaatcgtccactcttgaaaattttcaagccctaccgttgga |
100 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||| |||||||| ||||||||||||||||| |||||||||| ||||||||||||||| | || ||| |
|
|
| T |
42403964 |
gtagagtttcccaaaagctccttgagcaaaagcctcacccatatttagcttcctcaaatcaattgtccactcttcaaaattttcaagcccctcagtcgga |
42404063 |
T |
|
| Q |
101 |
gaactaaagtccatcagagcttgagctaaagcatcattactcaatgcatgagtgactcttccccgaagattggcgctgtgggcaaccgagtagttatcgt |
200 |
Q |
| |
|
||| || ||||||||||||||||||||||||||| | |||||||||||||| |||||||||||| ||||||||||||| ||||| || |||||||| | |
|
|
| T |
42404064 |
gaattattgtccatcagagcttgagctaaagcatcgtcgctcaatgcatgagtaactcttccccgacgattggcgctgtgtgcaacagaatagttatcat |
42404163 |
T |
|
| Q |
201 |
tggcgtgccacttcaatccttggtgatccaacatgcgggtatgggaatcattggacccaacactgctgttat |
272 |
Q |
| |
|
|||| ||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42404164 |
tggcacgcctcttcaacccttgatgatccaacatgcgggtatgggaatcattggacccaacactgctgttat |
42404235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University