View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11498_low_11 (Length: 317)
Name: NF11498_low_11
Description: NF11498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11498_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 15 - 301
Target Start/End: Original strand, 9401433 - 9401718
Alignment:
| Q |
15 |
agtcttcactggagcaacaaaaggtgggggcaaaagatctcacccttttctcgggtataatttagttttgtcgacagaaacgtaacatttggaaaaagtg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
9401433 |
agtcttcactggagcaacaaaaggtgggggcaaaagatctcacccttttctcgggtataatttagtcttgtcgacagaaacgtaacatttgcaaaaagtg |
9401532 |
T |
|
| Q |
115 |
tgtggcacgggaccaaaacaacgtatcaggatagttttggcatattcccatatgccattcacttgaattagaatctgaaacgataattccattatagatt |
214 |
Q |
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|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9401533 |
tgtggcacgggaccaatacaacgtatcaggatagtttcggcatattcccatatgccattcacttgaattagaatctgaaacgataattccattatagatt |
9401632 |
T |
|
| Q |
215 |
gtactgtctgaaatcaattaattatcaataaacaaaatgagaatcaaattattttaaaagcatggtttccaattcagcccttgaatg |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
9401633 |
gtactgtctgaaatcaattaattatcaataaacaaaatgagaatcaaa-tattttaaaagcatggtttccaattcagcccttgaatg |
9401718 |
T |
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