View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11498_low_15 (Length: 229)
Name: NF11498_low_15
Description: NF11498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11498_low_15 |
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| [»] scaffold0406 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 9e-97; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 5663596 - 5663790
Alignment:
| Q |
14 |
cataggagtggcacccttcataacttatgagtatattgttagaaaatatatattgtgggagctagtggtacaatggttaatagcattggacaagaagaca |
113 |
Q |
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| T |
5663596 |
cataggagtggcacccttcataacttacgagtatattgttagaaaatatatattgtgggtgctagtggtacaatggttagtagcattggacaagaagaca |
5663695 |
T |
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| Q |
114 |
cacattggtaaatagctcattgtagaaggagagaatatagtatatggaagcccttaatatattgtaattgtatttaaatgtttaaatacaatcgc |
208 |
Q |
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| T |
5663696 |
cacattgataaatagctcattgtagaaggagagaatatagtatatggaagcccttaatatattgtaattgtatttaaatgtttaaatacaatcgc |
5663790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 50 - 205
Target Start/End: Original strand, 5664702 - 5664858
Alignment:
| Q |
50 |
tgttagaaaatatatattgtgggagctagtggtacaatggttaatagcattggacaagaagacacacattggtaaatagctcattgtagaaggagagaat |
149 |
Q |
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| T |
5664702 |
tgttagaaaatatatagtgtggaagcaagttgtagagtggtatgtggcattggacaagaaggcacacattggtaattaatttattgtaggaggagagaat |
5664801 |
T |
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| Q |
150 |
atagtatatggaagcccttaata-tattgtaattgtatttaaatgtttaaatacaat |
205 |
Q |
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| T |
5664802 |
atgatacagggaagccctcaatattattgtcattgtatttaaaagcttgaatacaat |
5664858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 5046625 - 5046572
Alignment:
| Q |
98 |
attggacaagaagacacacattggtaaatagctcattgtagaaggagagaatat |
151 |
Q |
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| T |
5046625 |
attggacaaaaggacacgcattggtaagtagctcattgtaggaggagagaatat |
5046572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 5047396 - 5047343
Alignment:
| Q |
98 |
attggacaagaagacacacattggtaaatagctcattgtagaaggagagaatat |
151 |
Q |
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| T |
5047396 |
attggacaaaaggacacgcattggtaagtagctcattgtaggaggagagaatat |
5047343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 151
Target Start/End: Complemental strand, 24853562 - 24853462
Alignment:
| Q |
50 |
tgttagaaaatatatattgtgggagctagtggtacaatggttaatagcattggacaagaagacacacattggtaaatagctcattgtagaaggagagaat |
149 |
Q |
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| T |
24853562 |
tgttagaaaa-atatagtgtaggagctagtggtggagtgtttagtagcattggacaagaggacacatattggtaattagctcattgtaggaggaaagaat |
24853464 |
T |
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| Q |
150 |
at |
151 |
Q |
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|| |
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| T |
24853463 |
at |
24853462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 56 - 151
Target Start/End: Complemental strand, 24856448 - 24856353
Alignment:
| Q |
56 |
aaaatatatattgtgggagctagtggtacaatggttaatagcattggacaagaagacacacattggtaaatagctcattgtagaaggagagaatat |
151 |
Q |
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| T |
24856448 |
aaaatatatatcatatgagctagtggtggagtgtttagtagcattggacaagatgacacatattggtaattagctcattgtaggaggagagaatat |
24856353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 51246788 - 51246738
Alignment:
| Q |
101 |
ggacaagaagacacacattggtaaatagctcattgtagaaggagagaatat |
151 |
Q |
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| T |
51246788 |
ggacaagaggacacacattaggaattagctcattgtaggaggagagaatat |
51246738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 151
Target Start/End: Complemental strand, 6460 - 6396
Alignment:
| Q |
87 |
tggttaatagcattggacaagaagacacacattggtaaatagctcattgtagaaggagagaatat |
151 |
Q |
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| T |
6460 |
tggttagtagcattggacaagatgacacacattaggaattagctcattataggaggagataatat |
6396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 152
Target Start/End: Original strand, 22056427 - 22056530
Alignment:
| Q |
48 |
attgttagaaaatatatattgtgggagctagtggtacaatggttaatagcattggacaagaagacacacattggtaaatagctcattgtagaaggagaga |
147 |
Q |
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| T |
22056427 |
attgttggaaaa-atatagtgtaggagccaatggtagatttgttagtagcattggacaagaggacacatatttgtaattaactcattgtatgaggagaga |
22056525 |
T |
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| Q |
148 |
atata |
152 |
Q |
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||||| |
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| T |
22056526 |
atata |
22056530 |
T |
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