View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11498_low_18 (Length: 209)
Name: NF11498_low_18
Description: NF11498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11498_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 39294304 - 39294129
Alignment:
| Q |
15 |
cataggtacttcagctttgtcagcctgttaataaagctttccattgttccatgcctccagagctgcaatctcagcactgtgcttctcaaccaaatcagca |
114 |
Q |
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||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
39294304 |
cataggtacgttagctttgtcagcctgttaataaagctttccattgttccatgcctccagagctgcaatctcggcattgtgcttctcaaccaaatcagca |
39294205 |
T |
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| Q |
115 |
aaacgcagcaataagtcatcatcaacgtaattttaaaactcatataagttcatgtaagaaaggacactctgaagga |
190 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39294204 |
aaacgcagcaataagtcatcatcaacgtaattttaaaactcatataagttcatgtaagaaaggacacgctgaagga |
39294129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 8357422 - 8357597
Alignment:
| Q |
15 |
cataggtacttcagctttgtcagcctgttaataaagctttccattgttccatgcctccagagctgcaatctcagcactgtgcttctcaaccaaatcagca |
114 |
Q |
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||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
8357422 |
cataggtacataagctttgtcagcctgttaataaagctttccattgttccatgcctccagagctgcaatctaagcattgtgcttctcaaccaaatcagca |
8357521 |
T |
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| Q |
115 |
aaacgcagcaataagtcatcatcaacgtaattttaaaactcatataagttcatgtaagaaaggacactctgaagga |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8357522 |
aaacgcagcaataagtcatcatcaacgtaattttaaaactaatataagttcatgtaagaaaggacactctgaagga |
8357597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 4e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 15 - 127
Target Start/End: Original strand, 43999946 - 44000058
Alignment:
| Q |
15 |
cataggtacttcagctttgtcagcctgttaataaagctttccattgttccatgcctccagagctgcaatctcagcactgtgcttctcaaccaaatcagca |
114 |
Q |
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||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
43999946 |
cataggtacttcagctttggcagcctgttcataaagctttccattgttccatgcctccagagctgcaatctcatcattgtgcttctcaaccaaatcagca |
44000045 |
T |
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| Q |
115 |
aaacgcagcaata |
127 |
Q |
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|| |||| ||||| |
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| T |
44000046 |
aatcgcaacaata |
44000058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 190
Target Start/End: Original strand, 44000086 - 44000152
Alignment:
| Q |
124 |
aataagtcatcatcaacgtaattttaaaactcatataagttcatgtaagaaaggacactctgaagga |
190 |
Q |
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||||||| ||||||||||||| || |||||| ||| ||||||||| |||||||||||||||| |||| |
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| T |
44000086 |
aataagtaatcatcaacgtaaattgaaaactaatagaagttcatgcaagaaaggacactctgcagga |
44000152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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