View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11498_low_19 (Length: 201)
Name: NF11498_low_19
Description: NF11498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11498_low_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 9234837 - 9234667
Alignment:
| Q |
14 |
aagaaaaaaggattgaaggatagaagttttgatgtcatattcattttcacataccaacagttttactgacccagtttcttgcttccgtttcaactctaat |
113 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9234837 |
aagaaaacaggattgaaggaaagaagttttgatgtcatattcattttcacataccaacagttttactgacccagtttcttgcttccgtttcaactctaat |
9234738 |
T |
|
| Q |
114 |
gatttctggaacctcgaccatataaagaacaaatatttaggcagattttgttgagctaaccgattcataac |
184 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9234737 |
gatttccggaacctcgaccgtataaagaacaaatatttaggcagattttgttgagctaaccgattcataac |
9234667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University