View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11498_low_3 (Length: 420)
Name: NF11498_low_3
Description: NF11498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11498_low_3 |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 21 - 420
Target Start/End: Original strand, 12933079 - 12933484
Alignment:
| Q |
21 |
aacttgatgataaagccattccttgcatatttgtgggctatggagatgaggaatttggctataggttatgggatccagagaagagaagaattattagaag |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12933079 |
aacttgatgataaagccattccttgcatatttgtgggctatggagatgaggaatttggctataggttatgggatccagagaagagaagaattattagaag |
12933178 |
T |
|
| Q |
121 |
cagagatgtagtgtttcatgagcaagaaactatgtcagattctgctattctagaaacacctaaacgttatggtaaggttgatcttacacttaccacccct |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
12933179 |
cagagatgtagtgtttcatgagcaagaaactatgtcagattctactattctagaaacacctaaacgttatggtaaggttgatcttacacttaccactcct |
12933278 |
T |
|
| Q |
221 |
cctgtaagagttgctacagaagggggatatcttgatgaagaccctagggttgatggtgagccagtagttgaagatggtgatgatgaagatgttcaggatg |
320 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12933279 |
cctgtaagagttgccacagaagggggagatcttgatgaagaccctggggttgatggtgagccagtagttgaagatggtgatgatgaagatgttcaagatg |
12933378 |
T |
|
| Q |
321 |
gagagcaatccccaacatctcagctcaggagatcaagcagagatcatca------taccaggtaccctagttcggagtacatcctcatcactgatgaggg |
414 |
Q |
| |
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||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12933379 |
gagagcaatccacaacatctcatctcaggagatcaagcagagatcatcatccatctaccaggtaccctagttcggagtacatcctcatcactgatgaggg |
12933478 |
T |
|
| Q |
415 |
ggagcc |
420 |
Q |
| |
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|||||| |
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| T |
12933479 |
ggagcc |
12933484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 21 - 420
Target Start/End: Original strand, 14176349 - 14176754
Alignment:
| Q |
21 |
aacttgatgataaagccattccttgcatatttgtgggctatggagatgaggaatttggctataggttatgggatccagagaagagaagaattattagaag |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
14176349 |
aacttgatgataaagccattccttgcatatttgtgggctatggagatgaggaatttggctacaggttatgggatccagagaagagaagaattattagaag |
14176448 |
T |
|
| Q |
121 |
cagagatgtagtgtttcatgagcaagaaactatgtcagattctgctattctagaaacacctaaacgttatggtaaggttgatcttacacttaccacccct |
220 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
14176449 |
cagagatgtagtgtttcatgagcaagaaactatgtcagattctgctattctagaaacacctaaacgttatggtaaggttgatcttacacttaccactcct |
14176548 |
T |
|
| Q |
221 |
cctgtaagagttgctacagaagggggatatcttgatgaagaccctagggttgatggtgagccagtagttgaagatggtgatgatgaagatgttcaggatg |
320 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14176549 |
cctgtaagagttgccacagaagggggagatcttgatgaagaccctggggttgatggtgagccagtagttgaagatggtgatgatgaagatgttcaagatg |
14176648 |
T |
|
| Q |
321 |
gagagcaatccccaacatctcagctcaggagatcaagcagagatcatca------taccaggtaccctagttcggagtacatcctcatcactgatgaggg |
414 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14176649 |
gagagcaatccacaacatctcatctcaggagatcaagcagagatcatcatccatctaccaggtaccctagttcggagtacatcctcatcactgatgaggg |
14176748 |
T |
|
| Q |
415 |
ggagcc |
420 |
Q |
| |
|
|||||| |
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| T |
14176749 |
ggagcc |
14176754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 21 - 420
Target Start/End: Complemental strand, 28609527 - 28609122
Alignment:
| Q |
21 |
aacttgatgataaagccattccttgcatatttgtgggctatggagatgaggaatttggctataggttatgggatccagagaagagaagaattattagaag |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
28609527 |
aacttgatgataaagccattccttgcatatttgtgggctatggagatgaggaatttggctacaggttatgggatccagagaagagaagaattattagaag |
28609428 |
T |
|
| Q |
121 |
cagagatgtagtgtttcatgagcaagaaactatgtcagattctgctattctagaaacacctaaacgttatggtaaggttgatcttacacttaccacccct |
220 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28609427 |
cagagatgtagtgtttcataagcaagaaactatgtcagattctgctattctagaaacacctaaacgttatggtaaggttgatcttacacttaccactcct |
28609328 |
T |
|
| Q |
221 |
cctgtaagagttgctacagaagggggatatcttgatgaagaccctagggttgatggtgagccagtagttgaagatggtgatgatgaagatgttcaggatg |
320 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
28609327 |
cctgtaagagttgccacagaagggggagatcttgatgaagaccctggggttgatggtgagccagtagttgaagatggtgatgatgaagatgttcaagatg |
28609228 |
T |
|
| Q |
321 |
gagagcaatccccaacatctcagctcaggagatcaagcagagatcatca------taccaggtaccctagttcggagtacatcctcatcactgatgaggg |
414 |
Q |
| |
|
||||||||||| |||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28609227 |
gagagcaatccacaacatctcatctcaggagattaagcagagatcatcatccatctaccaggtaccctagttcggagtacatcctcatcactgatgaggg |
28609128 |
T |
|
| Q |
415 |
ggagcc |
420 |
Q |
| |
|
|||||| |
|
|
| T |
28609127 |
ggagcc |
28609122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 21 - 420
Target Start/End: Original strand, 15298869 - 15299274
Alignment:
| Q |
21 |
aacttgatgataaagccattccttgcatatttgtgggctatggagatgaggaatttggctataggttatgggatccagagaagagaagaattattagaag |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
15298869 |
aacttgatgataaagccattccttgcatatgtgcgggctatggagatgaggaatttggctacaggttatgggatccagagaagagaagaattattagaag |
15298968 |
T |
|
| Q |
121 |
cagagatgtagtgtttcatgagcaagaaactatgtcagattctgctattctagaaacacctaaacgttatggtaaggttgatcttacacttaccacccct |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
15298969 |
cagagatgtagtgtttcatgagcaagaaactatgtcagattctgctattccagaaacacctaaacgttatggtaaggttgatcttacagttaccactcct |
15299068 |
T |
|
| Q |
221 |
cctgtaagagttgctacagaagggggatatcttgatgaagaccctagggttgatggtgagccagtagttgaagatggtgatgatgaagatgttcaggatg |
320 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||| |||||||||||||||| |
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|
| T |
15299069 |
cctgtaagagttgccacagaagggggagatcttgatgaagaccctggggttaatggtgagttagtagttgaagatggtgatgaggaagatgttcaggatg |
15299168 |
T |
|
| Q |
321 |
gagagcaatccccaacatctcagctcaggagatcaagcagagatcatca------taccaggtaccctagttcggagtacatcctcatcactgatgaggg |
414 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||| |||||| |
|
|
| T |
15299169 |
gagagcaatgcccaacatctcagctcaagagatcaagcagagatcatcatccatctaccaggtaccctagtttggagtacattctcatcactgttgaggg |
15299268 |
T |
|
| Q |
415 |
ggagcc |
420 |
Q |
| |
|
|||||| |
|
|
| T |
15299269 |
ggagcc |
15299274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 21 - 332
Target Start/End: Complemental strand, 38995186 - 38994875
Alignment:
| Q |
21 |
aacttgatgataaagccattccttgcatatttgtgggctatggagatgaggaatttggctataggttatgggatccagag-aagagaagaattattagaa |
119 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| | ||||||||||||| | ||||||||||| ||||||| |
|
|
| T |
38995186 |
aacttgatgataaagccattccttgtatatttgtggggtatggagatgaggaatttggctgcacgttatgggatccaaaataagagaagaatcattagaa |
38995087 |
T |
|
| Q |
120 |
gcagagatgtagtgtttcatgagcaagaaactatgtcagattctgctattctagaaacacctaaacgttatggtaaggttgatcttacacttaccacccc |
219 |
Q |
| |
|
| | ||| ||| ||||||||||||||||||||||| || ||| | |||||| ||||||||||| | |||||||||||| |||||||| ||||| || |
|
|
| T |
38995086 |
gtaaagacgtattgtttcatgagcaagaaactatgacaaatt-tactattcctgaaacacctaagcacggtggtaaggttgaccttacactaaccactcc |
38994988 |
T |
|
| Q |
220 |
tcctgtaagagttgctacagaagggggatatcttgatgaagaccctagggttgatggtgagccagtagttgaagatggtgatgatgaagatgttcaggat |
319 |
Q |
| |
|
|||| |||||||||| | |||||||||| |||||||| || ||||||||||||||||||||||| | |||||||||||||||| ||| | | ||||| |
|
|
| T |
38994987 |
tcctataagagttgccaaagaagggggagatcttgattaaaaccctagggttgatggtgagccaacaattgaagatggtgatgacgaaaaaggataggat |
38994888 |
T |
|
| Q |
320 |
ggagagcaatccc |
332 |
Q |
| |
|
||||||||||||| |
|
|
| T |
38994887 |
ggagagcaatccc |
38994875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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