View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11498_low_5 (Length: 377)
Name: NF11498_low_5
Description: NF11498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11498_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 39581703 - 39581472
Alignment:
| Q |
17 |
atttccatggccctggaaagagatatttagactttggtgccttttcattttggctgcattattatcagcttcttaattcatcctccacagcatttgaata |
116 |
Q |
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| T |
39581703 |
atttccatggccctggaaagagatatttagactttggtgccttttcattttggctgcattattatcagcttcttaattcatcctccacagcatttgaata |
39581604 |
T |
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| Q |
117 |
aataaataaattattataataagtgcgtcgaaaatccaaaccaaccaatcatgttttaacgtacagggaacttccatttttcatgtctcaaatagctcca |
216 |
Q |
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| T |
39581603 |
aataaataaattattataataagtgcgtcgaaaatccaaaccaaccaatcatgttttaacgtacagggaacttccatttttcatgtctcaaatagctcca |
39581504 |
T |
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| Q |
217 |
atagtggataaatcaaattctaaatattcatt |
248 |
Q |
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| T |
39581503 |
atagtggataaatcaaattctaaatattcatt |
39581472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 113 - 232
Target Start/End: Complemental strand, 39571871 - 39571750
Alignment:
| Q |
113 |
aataaataaataaattattataataagtgcgtcgaaaatccaaaccaaccaatcatgttttaacgtacagggaacttccatttttcatgtctcaaat--a |
210 |
Q |
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| T |
39571871 |
aataaataaacaaattattatattaagtgcgtctaaaaccaaaactaaccaatcacatttgaacgtacagggaactttcatttttcatgtctcaaataaa |
39571772 |
T |
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| Q |
211 |
gctccaatagtggataaatcaa |
232 |
Q |
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| T |
39571771 |
gttccagtagttgataaatcaa |
39571750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 294 - 371
Target Start/End: Complemental strand, 39581426 - 39581347
Alignment:
| Q |
294 |
cggacaacttaatcacagtccacagatag--ttttcttcttatgcaagtcttcttcattggtctcccccttctctgctcc |
371 |
Q |
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| T |
39581426 |
cggacaacttaatcacagtccacagatagagtcttcttcttatgcaagtcttcttcattggtcccccccttctcttctcc |
39581347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 179
Target Start/End: Complemental strand, 39577122 - 39576983
Alignment:
| Q |
43 |
ttagactttggtgccttttcattttggctgcattattatcagcttcttaattcatcctccacagcatt----tgaataaataaataaattattataataa |
138 |
Q |
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||||||| | |||||||| ||||||| |||||||||| | |||||||||||||| |||| ||||||| |||| ||||||||||||||||||||||| |
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| T |
39577122 |
ttagactctagtgcctttccattttgt-tgcattattagctgcttcttaattcattctccgcagcattgaattgaacaaataaataaattattataataa |
39577024 |
T |
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| Q |
139 |
gtgcgtcgaaaatccaaaccaaccaatcatgttttaacgta |
179 |
Q |
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| T |
39577023 |
atgtatctaaaatcctaactaaccaatcacgtcttaacgta |
39576983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 244
Target Start/End: Complemental strand, 39582290 - 39582170
Alignment:
| Q |
120 |
aaataaattattataataagtgcgtcgaaaatccaaaccaaccaatcatgttttaacgtacagggaacttccatttttcatgtctcaaatagctccaata |
219 |
Q |
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||||||||||||||| ||||||| || | ||||||||||||||||||| |||||| ||||||| || ||||||||| ||||| ||| | |||| || |
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| T |
39582290 |
aaataaattattatattaagtgcatctataatccaaaccaaccaatcacgtttta----acagggatttttcatttttcaggtctctaatggttccagta |
39582195 |
T |
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| Q |
220 |
gtggataaatcaaattctaaatatt |
244 |
Q |
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|| | ||||||||||| ||||||| |
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| T |
39582194 |
gttgttaaatcaaatttcaaatatt |
39582170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 39513182 - 39513124
Alignment:
| Q |
63 |
attttggctgcattattatcagcttcttaattcatcctccacagcatttgaataaataa |
121 |
Q |
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|||||||||||||||||| |||| ||||||||||| || |||||||| ||||||||| |
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| T |
39513182 |
attttggctgcattattagcagcctcttaattcattttcagcagcatttaaataaataa |
39513124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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