View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11498_low_6 (Length: 365)
Name: NF11498_low_6
Description: NF11498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11498_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 42452396 - 42452047
Alignment:
| Q |
1 |
tcagagctttcagatgggtcatcaatttcaagtataagtccctcaacttgaagcaaattaagtctaagacaccaaaccctaggcatgatatatacccttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42452396 |
tcagagctttcagatgggtcatcaatttcaagtataagtccctcaacttgaagcaaattaagtctaagacaccaaaccctaggcataatatatacccttg |
42452297 |
T |
|
| Q |
101 |
agcaagtattaagagtatgacgagaactaattagcgcatgacctaattgtaaatgcgaagcttcatgaaatgcttcatcagcttgatttcctatccaaca |
200 |
Q |
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|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42452296 |
agcaagtattaagagtatgacgagcactaattagcacatgacctaattgtaaatgcgaagcttcatgaaatgcttcatcagcttgatttcctatccaaca |
42452197 |
T |
|
| Q |
201 |
acacatcataagctctcccctatatcgtctcttacattcatcttctagtacaaaccattttggtgctagtgcactatcagttggaaatcttttaggaata |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42452196 |
acacatcataagctctcccctatatcgtctcttacattcatcttctagtacaaaccattttggtgctagtgcactatcagttggaaatcttttaggaata |
42452097 |
T |
|
| Q |
301 |
tgaaaaatttccaatgaaatcatacccaaatatggatcatacgtagcaac |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42452096 |
tgaaaaatttccaatgaaatcatacccaaatatggatcatacctagcaac |
42452047 |
T |
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