View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11498_low_7 (Length: 364)
Name: NF11498_low_7
Description: NF11498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11498_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 13 - 348
Target Start/End: Complemental strand, 16903433 - 16903098
Alignment:
| Q |
13 |
gaagttccaagtggtttgcaatttttgcaaaagctaaagctagctaacatccacatcactgaaaaaatgtctggtatgttgattgagcattgtaagatgc |
112 |
Q |
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| T |
16903433 |
gaagttccaagtggtttgcaatttttgcaaaagctaaagctagctaacatccacatcactgaaaaaatgtctggtatgttgattgagcattgtaagatgc |
16903334 |
T |
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| Q |
113 |
ttgaaattattgttttaattaattgctctacaattaagaaattgaaattaattgctagacaaaataaacatttcaaagaattgagaatcgattattgtga |
212 |
Q |
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| T |
16903333 |
ttgaaatgattgttttaattaattgctctacaattaagaaattgaaattaattgctagacaaaataaacatttcaaagaattgagaatcgattattgtga |
16903234 |
T |
|
| Q |
213 |
ggacttggaagagattgaaatcgattcaccaactcttagttccattttttatcatggaaaatttccaattcttcgaattgctcaagggatgcaattctac |
312 |
Q |
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| T |
16903233 |
ggacttgaaagagattgaaatcgattcaccaactcttagttccattttttatcatggaaaatttccaattattcgaattgctcaagggatgcaattgtac |
16903134 |
T |
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| Q |
313 |
gatgctttatttcgctttacaccatcaagagaatac |
348 |
Q |
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| T |
16903133 |
gatgctttatttcgctttacaccatcaagagaatac |
16903098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 16 - 338
Target Start/End: Original strand, 28839413 - 28839735
Alignment:
| Q |
16 |
gttccaagtggtttgcaatttttgcaaaagctaaagctagctaacatccacatcactgaaaaaatgtctggtatgttgattgagcattgtaagatgcttg |
115 |
Q |
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| T |
28839413 |
gttccgagtggtttgcaatttctgcaaacactaagtctgtgtaacctccatattaccgaagatatgtttgatgtgttgattgagcattgtaaaatgcttg |
28839512 |
T |
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| Q |
116 |
aaattattgttttaattaattgctctacaattaagaaattgaaattaattgctagacaaaataaacatttcaaagaattgagaatcgattattgtgagga |
215 |
Q |
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| T |
28839513 |
aaattattgatttgattaaatgctctacaattaataatctcaacttaaatgctagagaaaataaacatttcaaaaaattgagacttgttgaatgcccaaa |
28839612 |
T |
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| Q |
216 |
cttggaagagattgaaatcgattcaccaactcttagttccattttttatcatggaaaatttccaattcttcgaattgctcaagggatgcaattctacgat |
315 |
Q |
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| T |
28839613 |
cttggaaaagattgaaattgattcaccaactcttcgttcaattttttatcatggaaatttttgtactgttcgaattgctgaagggatgaaattgtatgag |
28839712 |
T |
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| Q |
316 |
gctttatttcgctttacaccatc |
338 |
Q |
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| T |
28839713 |
gctttcttttactttataccatc |
28839735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 91 - 308
Target Start/End: Original strand, 28953453 - 28953670
Alignment:
| Q |
91 |
ttgattgagcattgtaagatgcttgaaattattgttttaattaattgctctacaattaagaaattgaaattaattgctagacaaaataaacatttcaaag |
190 |
Q |
| |
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|||||| |||||||||| |||||| || ||||| ||| ||||||||||| ||||||||||||||||| |||||||||||| |||||||| |||||||| |
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| T |
28953453 |
ttgattaagcattgtaaaatgcttaaatctattgatttgattaattgctccacaattaagaaattgaacttaattgctagagaaaataaatatttcaaaa |
28953552 |
T |
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| Q |
191 |
aattgagaatcgattattgtgaggacttggaagagattgaaatcgattcaccaactcttagttccattttttatcatggaaaatttccaattcttcgaat |
290 |
Q |
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| T |
28953553 |
aattaaaaattgtagactgtcgagatttgaaagagattgaaattgattcaccaactcttcattcaattttttatcatggaaaattttcaatagttcgaat |
28953652 |
T |
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| Q |
291 |
tgctcaagggatgcaatt |
308 |
Q |
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| T |
28953653 |
tattcaagggatgcaatt |
28953670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 92 - 335
Target Start/End: Original strand, 35448884 - 35449127
Alignment:
| Q |
92 |
tgattgagcattgtaagatgcttgaaattattgttttaattaattgctctacaattaagaaattgaaattaattgctagacaaaataaacatttcaaaga |
191 |
Q |
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|||||||||||||||| |||||||||| ||||| ||| ||||| |||||||||||||||||| |||| |||||||||||| |||| | |||||||||| | |
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| T |
35448884 |
tgattgagcattgtaaaatgcttgaaagtattgatttgattaaatgctctacaattaagaaactgaacttaattgctagagaaaacagacatttcaaaaa |
35448983 |
T |
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| Q |
192 |
attgagaatcgattattgtgaggacttggaagagattgaaatcgattcaccaactcttagttccattttttatcatggaaaatttccaattcttcgaatt |
291 |
Q |
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| T |
35448984 |
attaagaattgctagctgcggagatttgaaagagattgaaattgattcaccaactcttcattcaattttttatcatggaaaattttcaacaattcgaatt |
35449083 |
T |
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| Q |
292 |
gctcaagggatgcaattctacgatgctttatttcgctttacacc |
335 |
Q |
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| T |
35449084 |
gttcaagggatgcagttgtatgaggctttcttttactttacacc |
35449127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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