View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11498_low_9 (Length: 328)
Name: NF11498_low_9
Description: NF11498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11498_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 16 - 314
Target Start/End: Original strand, 6624004 - 6624302
Alignment:
| Q |
16 |
caccaatgatgtata-aaatattataaacaaaaaacaaagttaactatacatgtgttaacatgattannnnnnnn--gaatatttaaagtnnnnnnnnnn |
112 |
Q |
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| T |
6624004 |
caccaatgaagtatacaaatattataaacaaaaaacaaagttaactatacatgtgttgacatgatttttttttttttgaatatttaaagtaaagaaataa |
6624103 |
T |
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| Q |
113 |
nnncttaatatgcataggtaaattaccaactaaatagtcagtgtcatagtttctccaatcacttcatagattggaatcagctggtacggtgacttagtaa |
212 |
Q |
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| T |
6624104 |
aa-cttaatatgcataggtaaattaccaaccaaatagtcaatgtcatagtttctccaatcacttcatagattggaatcagctggtacggtgacttgataa |
6624202 |
T |
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| Q |
213 |
tgtttaggtttatgagatattgaaccttaaaactgaattgaaagtttagtttgtaactatgccgatagttgttctataaccaccaccgttatttacaata |
312 |
Q |
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| T |
6624203 |
tgtttaggtttaggagatattgaaccttaaaactgaattgaaagtttagtttgtaactgtgcc--tagtggttctataaccaccacagttgttgacaata |
6624300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 1568781 - 1568856
Alignment:
| Q |
136 |
taccaactaaatagtcagtgtcatagtttc-tccaatcacttcatagattggaatcagctggtacggtgacttagt |
210 |
Q |
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| T |
1568781 |
taccaactaagtaatcagtgtcataggttcctccaataacttcagagattggaaccaactgataaggtgacttagt |
1568856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 210
Target Start/End: Complemental strand, 33777576 - 33777501
Alignment:
| Q |
136 |
taccaactaaatagtcagtgtcatagtttc-tccaatcacttcatagattggaatcagctggtacggtgacttagt |
210 |
Q |
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|||||||||| || |||||||||||| ||| |||||| |||||| ||||||||| || ||| || ||||||||||| |
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| T |
33777576 |
taccaactaagtaatcagtgtcataggttcctccaataacttcagagattggaaccaactgataaggtgacttagt |
33777501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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