View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11499_high_10 (Length: 418)
Name: NF11499_high_10
Description: NF11499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11499_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 125 - 402
Target Start/End: Complemental strand, 25589613 - 25589331
Alignment:
| Q |
125 |
attaaacaaacaaatcatgcaaataattgttcacgatttcgctcatatgtggtgaagacgaacacaaataacatcaaaagatacaacaatata-----ta |
219 |
Q |
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| T |
25589613 |
attaaacaaacaaatcatgcaaataattgttcacgatttcgcccat--gtggtgaagacgaacacaaataacatcaaaacatacaacaatataatatata |
25589516 |
T |
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| Q |
220 |
ttgaatattttatttcatttgacaaatcaatacatattgaattaatcactatataatataatacatctc--tgagcttaactcagttggtaaggtcacag |
317 |
Q |
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| T |
25589515 |
ttgaatattttatttcatttgacaaatcaatacatattgaattaatcactatataatataatacatctctgtgagtttaattcagttggtaaaaacactg |
25589416 |
T |
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| Q |
318 |
cataatatatgtaaagacaaaactatcgaatcaataccttctttctccgctccgtctcattgatgtctctgattcgtgtagttct |
402 |
Q |
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| T |
25589415 |
cataatatatgtaaggacaaaattatctaatcaataccttctttttccgctcggtctcattgatgtctctaattcgtgtaattct |
25589331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 182 - 264
Target Start/End: Complemental strand, 25567520 - 25567439
Alignment:
| Q |
182 |
acgaacacaaataacatcaaaagatacaacaatatatattgaatattttatttcatttgacaaatcaatacatattgaattaa |
264 |
Q |
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| T |
25567520 |
acgaacacaaataacataaaaacatacgacaatccatattgaatattt-attttatttaacaaatcaatacatattgaattaa |
25567439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 34595996 - 34595952
Alignment:
| Q |
289 |
tgagcttaactcagttggtaaggtcacagcataatatatgtaaag |
333 |
Q |
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| T |
34595996 |
tgagtttaactcagttggtaaggacaatgcataatatatgtaaag |
34595952 |
T |
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