View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11499_high_19 (Length: 256)
Name: NF11499_high_19
Description: NF11499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11499_high_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 43609579 - 43609826
Alignment:
| Q |
1 |
tcttcaagatttttatgctttcattattggggtagtacattattattccttaatctctgttatttttcaaccaaattttattattttgatatagaatctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43609579 |
tcttcaagatttttatgctttcattattggggtagtacattattattccttaatctctgttatttttcaaccaaattttattattttgatatagaatctt |
43609678 |
T |
|
| Q |
101 |
aggactaattaggtctataatcctacttggttgctttttcagacttactttaactctgaatgtgcatggtgttgctctttcttatacttctgctatgctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43609679 |
aggactaattaggtctataatcctacttggttgctttttcagacttactttaactctgaatgtgcatggtgttgctctttcttatacttctgctatgctg |
43609778 |
T |
|
| Q |
201 |
tctggtgcaattgttaattgtcttccggcttcgacattcttctctgct |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43609779 |
tctggtgcaattgttaattgtcttccggcttcgacattcttctttgct |
43609826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 112 - 248
Target Start/End: Original strand, 43616236 - 43616371
Alignment:
| Q |
112 |
ggtctataatcctacttggttgctttttcagacttactttaactctgaatgtgcatggtgttgctctttcttatacttctgctatgctgtctggtgcaat |
211 |
Q |
| |
|
||||||| ||||||||| |||| ||||||||| ||||||||||| |||||||| ||||| |||||||| |||| || ||||||||| || ||| |||||| |
|
|
| T |
43616236 |
ggtctatgatcctactttgttg-tttttcagaattactttaactttgaatgtgaatggtattgctcttgcttacacgtctgctatgttggctgctgcaat |
43616334 |
T |
|
| Q |
212 |
tgttaattgtcttccggcttcgacattcttctctgct |
248 |
Q |
| |
|
|||||| |||||||||||||| |||||||||| |||| |
|
|
| T |
43616335 |
tgttaactgtcttccggcttcaacattcttctttgct |
43616371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 43603170 - 43603417
Alignment:
| Q |
1 |
tcttcaagatttttatgctttcattattggggtagtacattat---tattccttaatctct--gttatttttcaaccaaattttattattttgatataga |
95 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||| ||||| ||||||||| || |||| | ||| || | |||||||| | ||| |
|
|
| T |
43603170 |
tcttcaagatttttatgctttcactatttgggtagtacattatcattattctttaatctctatgtgatttctaaacaaa----tgctattttgacaaaga |
43603265 |
T |
|
| Q |
96 |
atcttaggactaattaggtctataatcctacttggttgctttttcagacttactttaactctgaatgtgcatggtgttgctctttcttatacttctgcta |
195 |
Q |
| |
|
||||||||||||||| ||| ||||||| ||||||||||||| |||| |||||||| ||||||||||||||||| |||| ||| ||| ||||||||| |
|
|
| T |
43603266 |
atcttaggactaattttttctgtaatccttcttggttgctttt-cagaattactttagctctgaatgtgcatggtattgcccttgtttacacttctgctt |
43603364 |
T |
|
| Q |
196 |
tgctgtctggtgcaattgttaattgtcttccggcttcgacattcttctctgct |
248 |
Q |
| |
|
| || ||| ||| ||||||||||| ||||| |||| |||||||||| |||| |
|
|
| T |
43603365 |
cgttggctgctgctattgttaattgccttcctgcttgtacattcttctttgct |
43603417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 43614890 - 43614923
Alignment:
| Q |
1 |
tcttcaagatttttatgctttcattattggggta |
34 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
43614890 |
tcttcaagatttttatgctttcattattggggta |
43614923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University