View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11499_high_20 (Length: 254)
Name: NF11499_high_20
Description: NF11499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11499_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 10748092 - 10748335
Alignment:
| Q |
1 |
taattgtcattcttttttgtctcttggatcctgcaatttatgaggacaaactcagcttaagcatatgttagtttaagtttcaataagttattttctttgt |
100 |
Q |
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| T |
10748092 |
taattgtcattcttttttgtctcttggatcctgcaatttatgaggacaaactcagcttaagcatatgttagtttaagtttcaataagttattttctttgt |
10748191 |
T |
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| Q |
101 |
gtagtgattatatatacatgttcatcaaactatgaatttattttgttagtttcatctttcactcaacgagccaacattttgttttgttaccagctagaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10748192 |
gtagtgattatatatacatgttcatcaaactatgaatttattttgttagtttcatctttcactcaacgagccaacattttgttttgttaccagctagaat |
10748291 |
T |
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| Q |
201 |
tggtttattaatttgtcagcttgagccttttcttctgatctctg |
244 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
10748292 |
tggtttattaatttgtcagcttgatccttttcttctgatttctg |
10748335 |
T |
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