View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11499_high_3 (Length: 561)

Name: NF11499_high_3
Description: NF11499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11499_high_3
NF11499_high_3
[»] chr1 (9 HSPs)
chr1 (19-228)||(49726317-49726527)
chr1 (337-541)||(49714289-49714493)
chr1 (345-541)||(49683038-49683234)
chr1 (345-538)||(49710650-49710844)
chr1 (337-541)||(49687943-49688148)
chr1 (351-504)||(49215347-49215500)
chr1 (351-516)||(49728511-49728676)
chr1 (345-541)||(49725064-49725260)
chr1 (278-332)||(49726275-49726329)
[»] chr6 (6 HSPs)
chr6 (363-499)||(31201386-31201522)
chr6 (357-496)||(31189573-31189712)
chr6 (378-499)||(31214165-31214286)
chr6 (354-499)||(31224434-31224579)
chr6 (364-487)||(31145522-31145645)
chr6 (364-487)||(31171835-31171958)
[»] scaffold0394 (1 HSPs)
scaffold0394 (367-417)||(2115-2165)
[»] chr7 (3 HSPs)
chr7 (342-412)||(33305159-33305229)
chr7 (367-403)||(31608433-31608469)
chr7 (369-417)||(31618445-31618493)
[»] chr4 (1 HSPs)
chr4 (367-417)||(15063369-15063419)


Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 49726527 - 49726317
Alignment:
Q  19 ataaggaggcatgaaaacaagaagaggtgttgtgagaacatgataaataatttgtgtggttctgtaatctatagtgagtaataaataatgtttcagttga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  49726527 ataaggaggcatgaaaacaagaagaggtgttgtgagaacatgataaataatttgtgtggttctgtaatctatagtgagtaataaataatgtttcaattga 49726428  T
Q  119 tatgatatactaaatatatgccataagacggaagcagtgcagagaaacagagaatggtcttgctatgcagccatttttgactgagtgtgtg-tttggcaa 217  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  49726427 tatgatatactaaatatatgccataagacggaagcagtggagagaaacagagaatggtcttgctatgcagccatttttgactgagtgtgtgttttggcaa 49726328  T
Q  218 ggtcataatag 228  Q
    |||||||||||    
T  49726327 ggtcataatag 49726317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 337 - 541
Target Start/End: Complemental strand, 49714493 - 49714289
Alignment:
Q  337 caaaaatggatactatactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgagg 436  Q
    |||| |||||||| || ||||||||||||||||||| |||||||||||| |||||||||||||| || |||||||| |||| ||||||||||||||||||    
T  49714493 caaatatggatacaatgctttcttttcttggacatactttagcaagtccgaaatctgaaattttaggacagaaatcttcatcaagtaatatattatgagg 49714394  T
Q  437 ttttatgtcaaaatgtaatattctagtgttgcagcctctgtgcaagtactccaatccacgagcaacgccaactgcaatatcatacaatgttttgcaatcc 536  Q
    ||| |||||||||||||| ||||||||||| |||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||    
T  49714393 tttaatgtcaaaatgtaagattctagtgttacagcctctgtgcaagtactctaacccacgagcaacaccaactgcaatatcatacaatgttttgcaatcc 49714294  T
Q  537 aattg 541  Q
    |||||    
T  49714293 aattg 49714289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 345 - 541
Target Start/End: Complemental strand, 49683234 - 49683038
Alignment:
Q  345 gatactatactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgt 444  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || | ||||||||||||||||||||||||||    
T  49683234 gatacaatgctttcttttcttggacatattttagcaagtccaaaatctgaaatttttggacacaaatcatcgtcaagtaatatattatgaggttttatgt 49683135  T
Q  445 caaaatgtaatattctagtgttgcagcctctgtgcaagtactccaatccacgagcaacgccaactgcaatatcatacaatgttttgcaatccaattg 541  Q
    |||||||||| ||||||||||||||||||||||||| |||||| || ||||||||||||||||| ||||||||||||||  ||||||| ||||||||    
T  49683134 caaaatgtaagattctagtgttgcagcctctgtgcatgtactctaacccacgagcaacgccaacagcaatatcatacaacattttgcattccaattg 49683038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 345 - 538
Target Start/End: Complemental strand, 49710844 - 49710650
Alignment:
Q  345 gatactatactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcc-tcatgaagtaatatattatgaggttttatg 443  Q
    ||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||   ||||  ||||||||||||||||||||||||    
T  49710844 gatacaatgctttcttttcttagacatattttagcaagtccaaaatctgaaatttttggacaaaaattaatcatctagtaatatattatgaggttttatg 49710745  T
Q  444 tcaaaatgtaatattctagtgttgcagcctctgtgcaagtactccaatccacgagcaacgccaactgcaatatcatacaatgttttgcaatccaa 538  Q
    |||||||| || |||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||    
T  49710744 tcaaaatgcaagattctagtgttgcagcctctgtgcaagtactctagtccacgagcaaccccaactgcaatatcatacaatgttttgcaatccaa 49710650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 337 - 541
Target Start/End: Complemental strand, 49688148 - 49687943
Alignment:
Q  337 caaaaatggatactatactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgagg 436  Q
    |||| |||||||| || |||||||||||  ||||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||||||||||||||||    
T  49688148 caaatatggatacaatgctttcttttctcagacatattttagcaagtccaaaatcagaattttttgggcagaaattctcatcaagtaatatattatgagg 49688049  T
Q  437 ttttatgtcaaaatgtaatattctagtgttgcagcctctgtgcaagtactccaatccacgagcaacg-ccaactgcaatatcatacaatgttttgcaatc 535  Q
    |||||||||||||||||| ||||||||||||||||||||  | || ||||| | ||||||||||||| ||||||||||||| ||||||||||||||||||    
T  49688048 ttttatgtcaaaatgtaagattctagtgttgcagcctctacgaaaatactctagtccacgagcaacgcccaactgcaatattatacaatgttttgcaatc 49687949  T
Q  536 caattg 541  Q
    ||||||    
T  49687948 caattg 49687943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 351 - 504
Target Start/End: Complemental strand, 49215500 - 49215347
Alignment:
Q  351 atactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgtcaaaat 450  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| || || ||||| |||   |||||||||||||||||| ||||||||||||    
T  49215500 atactttcttttcttgggcatattttagcaagtccaaaatctgaaattttcggacaaaaatcatcagctagtaatatattatgaggtcttatgtcaaaat 49215401  T
Q  451 gtaatattctagtgttgcagcctctgtgcaagtactccaatccacgagcaacgc 504  Q
    | || ||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  49215400 gcaagattctagtgttacagcctctgtgcaagtactctaatccacgagcaacgc 49215347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 351 - 516
Target Start/End: Complemental strand, 49728676 - 49728511
Alignment:
Q  351 atactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgtcaaaat 450  Q
    |||||||||||||||||||||| ||| |||||||||||||| ||||  || || || ||||| || |  || |||||||||||||||||||| |||||||    
T  49728676 atactttcttttcttggacatacttttgcaagtccaaaatccgaaaccttaggacaaaaatcatcgtctagcaatatattatgaggttttatatcaaaat 49728577  T
Q  451 gtaatattctagtgttgcagcctctgtgcaagtactccaatccacgagcaacgccaactgcaatat 516  Q
    |||| ||| |||| ||||| ||| ||||||  ||||| ||||| ||||||||||||| ||||||||    
T  49728576 gtaaaattttagtattgcaacctttgtgcagatactctaatccccgagcaacgccaattgcaatat 49728511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 345 - 541
Target Start/End: Complemental strand, 49725260 - 49725064
Alignment:
Q  345 gatactatactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgt 444  Q
    ||||| ||||||||||||||||  || ||||| |||||||||||||| |||||| | |||  ||||| |||||  |  |  || ||||||||||||||||    
T  49725260 gataccatactttcttttcttgtgcaaatttttgcaagtccaaaatccgaaattctggggttgaaattctcatccaaaagaatgttatgaggttttatgt 49725161  T
Q  445 caaaatgtaatattctagtgttgcagcctctgtgcaagtactccaatccacgagcaacgccaactgcaatatcatacaatgttttgcaatccaattg 541  Q
    ||||||| || |||||||| ||||||||| |||||| ||| || |  || ||||| || |||| ||| ||||  ||||| |||| ||||||||||||    
T  49725160 caaaatgcaaaattctagtattgcagcctttgtgcaggtattctagccctcgagctacaccaattgcgatatagtacaacgtttggcaatccaattg 49725064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 278 - 332
Target Start/End: Complemental strand, 49726329 - 49726275
Alignment:
Q  278 aaggtcataataggacaagtcaacagtcaacagtggactatcttagtgtatatat 332  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  49726329 aaggtcataataggaaaagtcaacagtcaacagtggactatcttagtatatatat 49726275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 363 - 499
Target Start/End: Original strand, 31201386 - 31201522
Alignment:
Q  363 cttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgtcaaaatgtaatattctag 462  Q
    |||||||| | ||| |||||||||||||||||||| ||||| || |||| |||||  |  |  |||||||| ||||||||||| |||||||| |||| ||    
T  31201386 cttggacaaagttttgcaagtccaaaatctgaaatctttggacaaaaattctcatctaaaagaatattatgtggttttatgtcgaaatgtaaaattcgag 31201485  T
Q  463 tgttgcagcctctgtgcaagtactccaatccacgagc 499  Q
    || | || ||||| ||||||||||| | |||||||||    
T  31201486 tggtacatcctctatgcaagtactctagtccacgagc 31201522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 357 - 496
Target Start/End: Original strand, 31189573 - 31189712
Alignment:
Q  357 tcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgtcaaaatgtaata 456  Q
    |||||| ||||||| | ||| |||||||||||||||||||||||||| || |||| |||||  |  |  || ||||| ||||||||||| |||||||| |    
T  31189573 tctttttttggacagagttttgcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggttttatgtcgaaatgtaaaa 31189672  T
Q  457 ttctagtgttgcagcctctgtgcaagtactccaatccacg 496  Q
    |||| ||| | || ||||| ||||||||||| | ||||||    
T  31189673 ttcttgtggtacatcctctatgcaagtactctagtccacg 31189712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 499
Target Start/End: Complemental strand, 31214286 - 31214165
Alignment:
Q  378 gcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgtcaaaatgtaatattctagtgttgcagcctctgt 477  Q
    ||||||||||||||||| || ||||| || ||||  ||||  | ||| |||||||| |||||||| ||||||||||| |||| |||  |||| ||||| |    
T  31214286 gcaagtccaaaatctgatatctttggacaaaaattttcatctaataaaatattatgtggttttatatcaaaatgtaaaattcgagtactgcatcctctat 31214187  T
Q  478 gcaagtactccaatccacgagc 499  Q
    ||| ||||||||| || |||||    
T  31214186 gcaggtactccaaccctcgagc 31214165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 354 - 499
Target Start/End: Complemental strand, 31224579 - 31224434
Alignment:
Q  354 ctttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgtcaaaatgta 453  Q
    |||||||| ||  |||||| ||| |||||||||||||||||||| || || || ||||  ||||  |  |  || || || |||||||||||||||||||    
T  31224579 ctttctttcctgagacatagttttgcaagtccaaaatctgaaatcttcggacataaattatcatctaaaaggatgttgtgtggttttatgtcaaaatgta 31224480  T
Q  454 atattctagtgttgcagcctctgtgcaagtactccaatccacgagc 499  Q
    | ||||||||| | || ||||  ||||||||||| | |||||||||    
T  31224479 aaattctagtggtacatcctccatgcaagtactctagtccacgagc 31224434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 487
Target Start/End: Original strand, 31145522 - 31145645
Alignment:
Q  364 ttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgtcaaaatgtaatattctagt 463  Q
    ||||||| | ||| |||||||||||||||||||| ||||| || || |  ||||  |  |  || ||||| |||||||||||||||||||| |||| |||    
T  31145522 ttggacagagttttgcaagtccaaaatctgaaatctttggacataagttttcatctaaaagaatgttatgtggttttatgtcaaaatgtaaaattcgagt 31145621  T
Q  464 gttgcagcctctgtgcaagtactc 487  Q
    | | || ||||| |||||||||||    
T  31145622 ggtacatcctctatgcaagtactc 31145645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 487
Target Start/End: Original strand, 31171835 - 31171958
Alignment:
Q  364 ttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgtcaaaatgtaatattctagt 463  Q
    ||||||| | ||| |||||||||||||||||||| ||||| || || |  ||||  |  |  || ||||| |||||||||||||||||||| |||| |||    
T  31171835 ttggacagagttttgcaagtccaaaatctgaaatctttggacataagttttcatctaaaagaatgttatgtggttttatgtcaaaatgtaaaattcgagt 31171934  T
Q  464 gttgcagcctctgtgcaagtactc 487  Q
    | | || ||||| |||||||||||    
T  31171935 ggtacatcctctatgcaagtactc 31171958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 367 - 417
Target Start/End: Original strand, 2115 - 2165
Alignment:
Q  367 gacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcat 417  Q
    |||||||||||||||| |||||||| || ||||||||||| ||||| ||||    
T  2115 gacatattttagcaagaccaaaatcagatatttttgggcaaaaatcttcat 2165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 342 - 412
Target Start/End: Complemental strand, 33305229 - 33305159
Alignment:
Q  342 atggatactatactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatc 412  Q
    |||||||| || || || || ||| ||||||||| ||| |||||||||||||| ||||||||||| |||||    
T  33305229 atggatacaatgctatccttcctttgacatatttgagctagtccaaaatctgagatttttgggcaaaaatc 33305159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 367 - 403
Target Start/End: Original strand, 31608433 - 31608469
Alignment:
Q  367 gacatattttagcaagtccaaaatctgaaatttttgg 403  Q
    ||||||||||||||||||||||||| || ||||||||    
T  31608433 gacatattttagcaagtccaaaatcagatatttttgg 31608469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 369 - 417
Target Start/End: Original strand, 31618445 - 31618493
Alignment:
Q  369 catattttagcaagtccaaaatctgaaatttttgggcagaaatcctcat 417  Q
    ||||||||||| |||||||||||||| |||||||| || ||||| ||||    
T  31618445 catattttagctagtccaaaatctgagatttttggacaaaaatcttcat 31618493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 367 - 417
Target Start/End: Complemental strand, 15063419 - 15063369
Alignment:
Q  367 gacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcat 417  Q
    |||||||||||||||| |||||||| || ||||||||||| ||||| ||||    
T  15063419 gacatattttagcaagaccaaaatcagatatttttgggcaaaaatcttcat 15063369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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