View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11499_low_1 (Length: 948)
Name: NF11499_low_1
Description: NF11499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11499_low_1 |
 | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 609; Significance: 0; HSPs: 16)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 156 - 933
Target Start/End: Complemental strand, 1969474 - 1968691
Alignment:
| Q |
156 |
ctccacttgagtgctaattgagaaagagtctttgtagtagaaccatcttctttatgtacactactagcagcttctttaaattccttcatattattacgca |
255 |
Q |
| |
|
|||||||||||||||| |||||||| ||| ||||||| ||||||||||||||| | || | |||||||||||| ||||||||||| ||||| |||| |
|
|
| T |
1969474 |
ctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttctttgattgcatttgaagcagcttcttttaattccttcatgttattgcgca |
1969375 |
T |
|
| Q |
256 |
gtttcccaccttcttccccttccatgagacacttgatcaactcagcaatttctaccctttccacaatgccattctcgttaactcttggcctcagtcccac |
355 |
Q |
| |
|
||| |||||||||| ||||||||||||| |||||||| || | ||| ||| | |||||||||||||| || || ||||||||||||||||||||||| |
|
|
| T |
1969374 |
acttctcaccttcttctccttccatgagacgcttgatcaccttaacaacctcttctctttccacaatgccgttttcattaactcttggcctcagtcccac |
1969275 |
T |
|
| Q |
356 |
ttttaggccttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggccatgtgattagtggcacaccatgcaacacactctcaagggttgaa |
455 |
Q |
| |
|
||||||||||||||||| |||||| |||||| || ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1969274 |
ttttaggccttcactcagcaaaacggcattcattttctgctcagcaaacaaaggccatgtgattagtggcacaccatgcaacacactctcaagggttgaa |
1969175 |
T |
|
| Q |
456 |
ttccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttc |
555 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1969174 |
ttccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttc |
1969075 |
T |
|
| Q |
556 |
tctccaagaacccagat------ggtaaaaactgcaaagtgtcaatgtcattttctgctgaaagatatcctgcactagatgaactgctactcggtgctcg |
649 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1969074 |
tctccaagaacccagatccagatggtaaaaactgcaaagtgtcaatatcattttctgctgaaagatatcctgcactagatgaactgctactcggtgctcg |
1968975 |
T |
|
| Q |
650 |
caaaacccacgagaattttttattactcaattccaaacctaaagccagctccacaatttgttcgtgtgaaagtgtaccaccactcccgaaagatacatac |
749 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1968974 |
caaaacccacgagaattttttattactcaattccaaacctaaagccagctccacaatttgttcgtgtgaaagtgtaccaccactcccgaaagatacatac |
1968875 |
T |
|
| Q |
750 |
aaaactgagcaaggctgctgtttatccaaccaggccagacactccaagccattagcatcatcacctgaacttgtttctgtttggataattggtccaacag |
849 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1968874 |
aaaactgagcaaggctgctgtttatccaaccaggccagacactccaagccattagcatcatcacctgaacttgtttctgtttggataattggtccaacag |
1968775 |
T |
|
| Q |
850 |
gatacactggagggttgtcacttccctcctctttcatttcacttataggtcccatctccaattccaggaagctattaacaaaaa |
933 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1968774 |
gatacactggagggttgtcacttccctcctctttcattgcacttataggtcccatctccaattccaggaagctattaacaaaaa |
1968691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 136 - 930
Target Start/End: Original strand, 2007528 - 2008321
Alignment:
| Q |
136 |
gtttttctataccaaagttactccacttgagtgctaattgagaaagagtctttgtagtagaaccatcttctttatgtacactactagcagcttctttaaa |
235 |
Q |
| |
|
||||||||| |||||| || |||||||| ||||||| |||||||| ||| ||||||| ||||||||||||||| | || | |||||||||||| || |
|
|
| T |
2007528 |
gtttttctacaccaaattt-ctccacttaagtgctatttgagaaatagtttttgtagaagaaccatcttctttgactgcatttgaagcagcttcttttaa |
2007626 |
T |
|
| Q |
236 |
ttccttcatattattacgcagtttcccaccttcttccccttccatgagacacttgatcaactcagcaatttctaccctttccacaatgccattctcgtta |
335 |
Q |
| |
|
||||||||| ||||| || | |||| |||| || || |||||||||||| ||||||||| || ||||| |||||||||||||| |||||||| || ||| |
|
|
| T |
2007627 |
ttccttcatgttattgcgtaatttctcaccctcgtctccttccatgagatacttgatcaccttagcaacctctaccctttccactatgccattttcatta |
2007726 |
T |
|
| Q |
336 |
actcttggcctcagtcccacttttaggccttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggccatgtgattagtggcacaccatgca |
435 |
Q |
| |
|
|| |||| |||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||| ||||||| |||||||| |||| |
|
|
| T |
2007727 |
acacttgccctcagtcccacttttagtccttcactcaacaaaaccgcattcattttctgctcagcaaatagaggccacgtgattaacggcacaccgtgca |
2007826 |
T |
|
| Q |
436 |
acacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcggcgcccatgatgtaataac |
535 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2007827 |
ccacactctcaagggttgaattccagccacaatgcgtcaagaacccaccaactgagttgtgacttaggatttgaatctgcggcgcccatgatgtaataac |
2007926 |
T |
|
| Q |
536 |
aaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatgtcattttctgctgaaagatatcctgcactagatgaactg |
635 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2007927 |
aaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatatcattttctgctgaaagatatcctgcactagatgaactg |
2008026 |
T |
|
| Q |
636 |
ctactcggtgctcgcaaaacccacgagaattttttattactcaattccaaacctaaagccagctccacaatttgttcgtgtgaaagtgtaccaccactcc |
735 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||| ||||||| |
|
|
| T |
2008027 |
ctactcggtgctcgcaaaacccacaagaattttgtattactcaattccaaacccaaagctagctccacaatttgctcctgtgaaagtgtacctccactcc |
2008126 |
T |
|
| Q |
736 |
cgaaagatacatacaaaactgagcaaggctgctgtttatccaaccaggccagacactccaagccattagcatcatcacctgaacttgtttctgtttggat |
835 |
Q |
| |
|
| ||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||| |
|
|
| T |
2008127 |
caaaagatacatacaaaaccgaacaaggttgctgtttatccaaccaggccagacactccaagccattagcatcatcaccagattttgtttctgtttcgat |
2008226 |
T |
|
| Q |
836 |
aattggtccaacaggatacactggagggttgtcacttccctcctctttcatttcacttataggtcccatctccaattccaggaagctattaacaa |
930 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||| |||||||| | ||| |||||||||||||||| |
|
|
| T |
2008227 |
aataggtccaacaggatacactggagggttgtcacctccctcctctttcattgcacttagaggacccatctctatttctaggaagctattaacaa |
2008321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 44 - 927
Target Start/End: Complemental strand, 1963976 - 1963097
Alignment:
| Q |
44 |
ataacggatgaccaaacacat--tgaagatacgtaaactgtgaaatattaggccaaataaggtgatcttaataatacatattgtcataaaacttgttttt |
141 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1963976 |
ataacggatgaccaaacacatattgaagatacgtaaactgtgaaatataaggccaaataaggtgatcttaataatacatattgtcataaaacttgttttt |
1963877 |
T |
|
| Q |
142 |
ctataccaaagttactccacttgagtgctaattgagaaagagtctttgtagtagaaccatcttctttatgtacactactagcagcttctttaaattcctt |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1963876 |
ctataccaaagttactccacttgagtgctaattgagaaagagtctttgtagtagaaccatcttctttatgtacactactagcagcttctttaaattcctt |
1963777 |
T |
|
| Q |
242 |
catattattacgcagtttcccaccttcttccccttccatgagacacttgatcaactcagcaatttctaccctttccacaatgccattctcgttaactctt |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1963776 |
catattattacgcagtttcccaccttcttccccttccatgagacacttgatcaactcagcaatttctaccctttccacaatgccattctcgttaactctt |
1963677 |
T |
|
| Q |
342 |
ggcctcagtcccacttttaggccttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggccatgtgattagtggcacaccatgcaacacac |
441 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||| ||||| ||||||||||||||| | |||||||| ||||||||||||||||||| || ||||| |
|
|
| T |
1963676 |
ggcctcagtcccacttttaggccttcacagagcaaaactgcatttgttctctgctcagcatacagaggccaagtgattagtggcacaccatacaccacac |
1963577 |
T |
|
| Q |
442 |
tctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcggcgcccatgatgtaataacaaaacc |
541 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||| || |||||||| || ||||||| |||||||||||||| || |||||||||| || ||| | || |
|
|
| T |
1963576 |
tctcaagggttgaattccaaccacaatgagacaaaaacccaccaatggaactgtgactaaggatttgaatctgtggtgcccatgatggaacaaccatccc |
1963477 |
T |
|
| Q |
542 |
tttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatgtcattttctgctgaaagatatcctgcactagatgaactgctactc |
641 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||||||| |||| |||| ||| ||||||||||||| | ||| | | || | ||||| |
|
|
| T |
1963476 |
ttgttccttggttctctccaaaaacccagatggtaaaaactgtaaaggatcaa---catcagatgctgaaagatatgcagcatttgctg---tactactt |
1963383 |
T |
|
| Q |
642 |
ggtgctcgcaaaacccacgagaattttttattactcaattccaaacctaaagccagctccacaatttgttcgtgtgaaagtgtaccaccactcccgaaag |
741 |
Q |
| |
|
|| |||| | |||||| ||||||| | |||||||||||||||||| ||||||| ||| |||||||||| || |||||||| |||||||| || |||| |
|
|
| T |
1963382 |
ggagctcttacaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccactaccaaaag |
1963283 |
T |
|
| Q |
742 |
atacatacaaaactgagcaaggctgctgtttatccaaccaggccagacactccaagccattagcatcatcacctgaacttgtttctgtttggataattgg |
841 |
Q |
| |
|
| |||||||||||||| ||||| ||||| |||||||| | ||||||||| || ||||||||||||||| || ||||| |||||||||||| || |
|
|
| T |
1963282 |
aaacatacaaaactgaacaaggacattgtttgtccaaccatgtcagacactcaaacttattagcatcatcaccagatgttgttagtgtttggataatggg |
1963183 |
T |
|
| Q |
842 |
tccaacaggatacactggagggttgtcacttccctcctctttcatttcacttataggtcccatctccaattccaggaagctattaa |
927 |
Q |
| |
|
|||||||| |||||| || |||| |||||||| || ||| ||||| | |||||| ||| | || | ||||||||||||||||| |
|
|
| T |
1963182 |
tccaacagcatacacaagaaggttttcacttccttcatctgtcattgcttctataggacccttttcaatttccaggaagctattaa |
1963097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 156 - 930
Target Start/End: Original strand, 2004167 - 2004941
Alignment:
| Q |
156 |
ctccacttgagtgctaattgagaaagagtctttgtagtagaaccatcttctttatgtacactactagcagcttctttaaattccttcatattattacgca |
255 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||| ||||||||||||||| || | ||||| |||||| ||||||||||| ||||| |||| |
|
|
| T |
2004167 |
ctccacttgagtgctaattgagaaatagtgtttgtagaagaaccatcttctttgacagcattcgaagcagattcttttaattccttcatgttattgcgca |
2004266 |
T |
|
| Q |
256 |
gtttcccaccttcttccccttccatgagacacttgatcaactcagcaatttctaccctttccacaatgccattctcgttaactcttggcctcagtcccac |
355 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| |||||||| || ||||| |||| ||||| |||||| |
|
|
| T |
2004267 |
atttctcaccttcttccccttccatgagacacttgatcaccttagcaacctctaccctttccactatgccattttcattaacacttgccctcaatcccac |
2004366 |
T |
|
| Q |
356 |
ttttaggccttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggccatgtgattagtggcacaccatgcaacacactctcaagggttgaa |
455 |
Q |
| |
|
|||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
2004367 |
ttttagtccttcactcaacaaaaccgcattcattttctgctcagcaaatagaggccatgttattagtggcacaccatgcaccacactctctagggttgaa |
2004466 |
T |
|
| Q |
456 |
ttccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttc |
555 |
Q |
| |
|
||||||||||||||||||||||| || || | ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2004467 |
ttccagccacaatgagtcaagaacccgccgactgagttgtgacttaggatttgaatctgcggcacccatgatgtaatgacaaaacctttctccttggttc |
2004566 |
T |
|
| Q |
556 |
tctccaagaacccagatggtaaaaactgcaaagtgtcaatgtcattttctgctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaac |
655 |
Q |
| |
|
||||||||||||| ||||| ||||||||| |||||||| ||||||| |||||||| ||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
2004567 |
tctccaagaacccggatggcaaaaactgccaagtgtcagcatcattttgtgctgaaaaatatcctgcactagatgaactactacttggtgctcgcaaaac |
2004666 |
T |
|
| Q |
656 |
ccacgagaattttttattactcaattccaaacctaaagccagctccacaatttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaact |
755 |
Q |
| |
|
|||| ||||| | |||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
2004667 |
ccacaagaatatcttattactcaattccaaacccaaagccagctcaacaatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaact |
2004766 |
T |
|
| Q |
756 |
gagcaaggctgctgtttatccaaccaggccagacactccaagccattagcatcatcacctgaacttgtttctgtttggataattggtccaacaggataca |
855 |
Q |
| |
|
|| ||||| ||||||||||||||||| | ||||| ||||| |||| | | ||||||| |||||| | || |||| || |||||||||||||||| |
|
|
| T |
2004767 |
gaacaaggttgctgtttatccaaccatgttagacattccaacccatgattagcatcaccggaactttctatcgtcgggatgatgggtccaacaggataca |
2004866 |
T |
|
| Q |
856 |
ctggagggttgtcacttccctcctctttcatttcacttataggtcccatctccaattccaggaagctattaacaa |
930 |
Q |
| |
|
| |||||||| |||||||| || ||||||||| |||||||||| |||||||||| ||| |||||||||||||||| |
|
|
| T |
2004867 |
caggagggttttcacttccttcatctttcattgcacttataggacccatctccatttctaggaagctattaacaa |
2004941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 112 - 849
Target Start/End: Original strand, 2017907 - 2018637
Alignment:
| Q |
112 |
ataatacatattgtcataaaacttgtttttctataccaaagttactccacttgagtgctaattgagaaagagtctttgtagtagaaccatcttctttatg |
211 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||| ||| ||||| |||||||| |
|
|
| T |
2017907 |
ataatacatattgtcatacaacttgtttttctataccaaattt-ctccacttgagtgctaattgagaaagtgtctttgtaaaagatccatcatctttatg |
2018005 |
T |
|
| Q |
212 |
tacactactagcagcttctttaaattccttcatattattacgcagtttcccaccttcttccccttccatgagacacttgatcaactcagcaatttctacc |
311 |
Q |
| |
|
| ||||| |||||| |||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| |
|
|
| T |
2018006 |
tgcactattagcagattcttttaattccttcatatttttgcgcagtttcccaccttcttccccttccatgagacacttgattaactctgcaatttgtacc |
2018105 |
T |
|
| Q |
312 |
ctttccacaatgccattctcgttaactcttggcctcagtcccacttttaggccttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggcc |
411 |
Q |
| |
|
|||||||||||||||||| |||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2018106 |
ttttccacaatgccattctgattaatttttggcctcagtcccacttttagtccttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggcc |
2018205 |
T |
|
| Q |
412 |
atgtgattagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaat |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||| ||| |||||| ||||||||||| |
|
|
| T |
2018206 |
atgtgattagtggcacaccatgcaacacactctcaagcgttgaattccaaccacagtgagtcaagaacccaccaactgaactgtgacgaaggatttgaat |
2018305 |
T |
|
| Q |
512 |
ctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatgtcattttctgctgaa |
611 |
Q |
| |
|
||| || |||||||||| |||||| | |||| ||||| |||||||||||||||| || |||||||| || |||| ||||| ||| ||||||| |
|
|
| T |
2018306 |
ctgtggtgcccatgatggaataaccatcccttgttccttttttctctccaagaaccctgaaggtaaaaattgtaaagggtcaa---catcagatgctgaa |
2018402 |
T |
|
| Q |
612 |
agatatcctgcactagatgaactgctactcggtgctcgcaaaacccacgagaattttttattactcaattccaaacctaaagccagctccacaatttgtt |
711 |
Q |
| |
|
|||||| | ||| | | || | |||| |||| || | |||||| ||||||| | |||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
2018403 |
agatatgcagcattggctg---tattacttggtgatcttacaacccataagaatttatgattactcaattccaaacccaaagccagctcattaatttgtt |
2018499 |
T |
|
| Q |
712 |
cgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaaggctgctgtttatccaaccaggccagacactccaagccattagcatcatc |
811 |
Q |
| |
|
| || |||||||| ||||||||||| ||||| |||||||||||||| |||| |||||||| |||||||| |||||||||| ||| |||||| ||||||| |
|
|
| T |
2018500 |
cttgcgaaagtgtgccaccactcccaaaagaaacatacaaaactgaacaagtttgctgtttgtccaaccatgccagacacttcaacccattatcatcatc |
2018599 |
T |
|
| Q |
812 |
acctgaacttgtttctgtttggataattggtccaacag |
849 |
Q |
| |
|
||| || | ||| |||||||||||||||||||||| |
|
|
| T |
2018600 |
acccgatttggttggcgtttggataattggtccaacag |
2018637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 104 - 874
Target Start/End: Original strand, 2014515 - 2015279
Alignment:
| Q |
104 |
tgatcttaataatacatattgtcataaaacttgtttttctataccaaagttactccacttgagtgctaattgagaaagagtctttgtagtagaaccatct |
203 |
Q |
| |
|
||||||||||| | ||||||||||| ||||||||||||| ||||||||||| |||||||| || |||||||||||||||||||||||| ||| || || |
|
|
| T |
2014515 |
tgatcttaatattgcatattgtcattaaacttgtttttcaataccaaagtttctccacttaagaactaattgagaaagagtctttgtagcagacccgtca |
2014614 |
T |
|
| Q |
204 |
tctttatgtacactactagcagcttctttaaattccttcatattattacgcagtttcccaccttcttccccttccatgagacacttgatcaactcagcaa |
303 |
Q |
| |
|
||||||||| ||||| |||||| |||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
2014615 |
tctttatgtgcactattagcagattcttttaattccttcatatttttgcgcagtttcccaccttcttccccttccatgagacacttgattaactctgcaa |
2014714 |
T |
|
| Q |
304 |
tttctaccctttccacaatgccattctcgttaactcttggcctcagtcccacttttaggccttcactcaacaaaaccgcattcgttctctgctcagcaaa |
403 |
Q |
| |
|
||| |||| |||||||||||||||||| |||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2014715 |
tttgtaccttttccacaatgccattctgattaatttttggcctcagtcccacttttagtccttcactcaacaaaaccgcattcgttctctgctcagcaaa |
2014814 |
T |
|
| Q |
404 |
tagaggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttagg |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||| ||||||| ||| |||||| ||| |
|
|
| T |
2014815 |
tagaggccatgtgattagtggcacaccatgcaacacactctcaagcattgaattccaaccacagtgagtcaagaacccaccaactgaactgtgacgaagg |
2014914 |
T |
|
| Q |
504 |
atttgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatgtcatttt |
603 |
Q |
| |
|
||||||||||| || |||||||||| |||||| | |||| ||||| ||||||||||||||||| || |||||||| || |||| ||||| ||| |
|
|
| T |
2014915 |
atttgaatctgtggtgcccatgatggaataaccatcccttgttcctttgttctctccaagaaccctgaaggtaaaaattgtaaagggtcaa---catcag |
2015011 |
T |
|
| Q |
604 |
ctgctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaacccacgagaattttttattactcaattccaaacctaaagccagctccac |
703 |
Q |
| |
|
||||||||||||| | ||| | | || | |||| |||| || | |||||| ||||||| | |||||||||||||||||| ||||||||||| |
|
|
| T |
2015012 |
atgctgaaagatatgcagcattggctg---tattacttggtgatcttacaacccataagaatttatgattactcaattccaaacccaaagccagctcatt |
2015108 |
T |
|
| Q |
704 |
aatttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaaggctgctgtttatccaaccaggccagacactccaagccatta |
803 |
Q |
| |
|
||||||||| || |||||||| ||||||||||||||||| ||||||| |||||| |||||| | ||||| |||||||| |||||||| || || |||| |
|
|
| T |
2015109 |
aatttgttcttgcgaaagtgttccaccactcccgaaagacacatacagaactgaacaaggccgttgtttgtccaaccatgccagacattcaaacttatta |
2015208 |
T |
|
| Q |
804 |
gcatcatcacctgaacttgtttctgtttggataattggtccaacaggatacactggagggttgtcacttcc |
874 |
Q |
| |
|
||||||||||| || ||||| |||||||||||| |||||||||| |||||| || |||| |||||||| |
|
|
| T |
2015209 |
gcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttcc |
2015279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 156 - 930
Target Start/End: Original strand, 2011162 - 2011936
Alignment:
| Q |
156 |
ctccacttgagtgctaattgagaaagagtctttgtagtagaaccatcttctttatgtacactactagcagcttctttaaattccttcatattattacgca |
255 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| ||| ||||||||||| || || || |||| ||||||| ||||||||||||||||| ||| |
|
|
| T |
2011162 |
ctccacttgagtgttaattgagaaatagtctttgtagaagatccatcttctttgagtgcattagaagcaacttcttttaattccttcatattattgtgca |
2011261 |
T |
|
| Q |
256 |
gtttcccaccttcttccccttccatgagacacttgatcaactcagcaatttctaccctttccacaatgccattctcgttaactcttggcctcagtcccac |
355 |
Q |
| |
|
|||| ||| ||||| ||||||||||||| |||||||| || ||||| || |||||||| ||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
2011262 |
atttctcacactcttctccttccatgagacgcttgatcaccttagcaacctccaccctttcgacaataccattttcgttaactcttggcctcagtcccac |
2011361 |
T |
|
| Q |
356 |
ttttaggccttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggccatgtgattagtggcacaccatgcaacacactctcaagggttgaa |
455 |
Q |
| |
|
||| ||||| ||| ||| |||||| |||||| ||| ||| |||||||| | ||||||||||||||||||||| ||||| | |||||| ||||| ||||| |
|
|
| T |
2011362 |
tttaaggccctcagtcaccaaaactgcattcattccctgttcagcaaacataggccatgtgattagtggcaccccatgaaccacactttcaagtgttgag |
2011461 |
T |
|
| Q |
456 |
ttccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttc |
555 |
Q |
| |
|
|||| ||||| ||| ||||||| || |||| ||| | ||||| |||||||||||||| || |||||||||||||| |||||||||| ||| ||||||| |
|
|
| T |
2011462 |
ctccaaccacagtgactcaagaacccgccaactgaactatgactaaggatttgaatctgaggtgcccatgatgtaatgacaaaaccttcctctttggttc |
2011561 |
T |
|
| Q |
556 |
tctccaagaacccagatggtaaaaactgcaaagtgtcaatgtcattttctgctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaac |
655 |
Q |
| |
|
||||||| ||||||||||||||||| || |||| |||| ||||||| ||||||||||||| ||||| |||||||||| ||||| |||||||||| ||| |
|
|
| T |
2011562 |
tctccaaaaacccagatggtaaaaattgtaaagcatcaacatcattttgtgctgaaagatatgctgcattagatgaactactacttggtgctcgcacaac |
2011661 |
T |
|
| Q |
656 |
ccacgagaattttttattactcaattccaaacctaaagccagctccacaatttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaact |
755 |
Q |
| |
|
||| |||||| | |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
2011662 |
ccataggaatttctgattactcaattccaaacccaaagccagctcaacaatttgttcgtgtgaaagtgtaccaccactaccgaaagacacatacaaaact |
2011761 |
T |
|
| Q |
756 |
gagcaaggctgctgtttatccaaccaggccagacactccaagccattagcatcatcacctgaacttgtttctgtttggataattggtccaacaggataca |
855 |
Q |
| |
|
|| |||| || ||||| || ||||| | |||||||||||| ||||||||||||||| | |||| |||| |||| ||||| || |||||||||||||| | |
|
|
| T |
2011762 |
gaacaagattgttgtttgtctaaccatgacagacactccaaaccattagcatcatcaacagaacctgttactgtctggatgatgggtccaacaggataga |
2011861 |
T |
|
| Q |
856 |
ctggagggttgtcacttccctcctctttcatttcacttataggtcccatctccaattccaggaagctattaacaa |
930 |
Q |
| |
|
| | ||||||| ||||||| |||||| ||| | || ||||||||||||| |||| ||| | |||||||||||||| |
|
|
| T |
2011862 |
cagaagggttgccacttccttcctctgtcaatgcatttataggtcccatttccatttctaagaagctattaacaa |
2011936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 299; E-Value: 1e-167
Query Start/End: Original strand, 156 - 930
Target Start/End: Complemental strand, 1965532 - 1964758
Alignment:
| Q |
156 |
ctccacttgagtgctaattgagaaagagtctttgtagtagaaccatcttctttatgtacactactagcagcttctttaaattccttcatattattacgca |
255 |
Q |
| |
|
||||||||||||| ||||||||| | ||||||||||| ||| ||||||||||| || || | |||| || |||| || |||||||||||||| ||| |
|
|
| T |
1965532 |
ctccacttgagtgttaattgagatatagtctttgtagaagatccatcttctttgagtgcattggaagcaactccttttaactccttcatattattgtgca |
1965433 |
T |
|
| Q |
256 |
gtttcccaccttcttccccttccatgagacacttgatcaactcagcaatttctaccctttccacaatgccattctcgttaactcttggcctcagtcccac |
355 |
Q |
| |
|
|||| ||| ||||| |||||||||||||||||||||| || ||||| || |||||||| ||||| || || |||||||||||||| ||||||||||| |
|
|
| T |
1965432 |
atttctcacactcttctccttccatgagacacttgatcaccttagcaacctccaccctttcgacaataccgttttcgttaactcttggtctcagtcccac |
1965333 |
T |
|
| Q |
356 |
ttttaggccttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggccatgtgattagtggcacaccatgcaacacactctcaagggttgaa |
455 |
Q |
| |
|
||| ||||| || ||| |||||| |||||| ||| ||| |||||||| | ||||||||||||||||||||| ||||||| |||||| ||||||||||| |
|
|
| T |
1965332 |
tttaaggcccccagtcaccaaaactgcattcattccctgttcagcaaacataggccatgtgattagtggcactccatgcaccacactttcaagggttgag |
1965233 |
T |
|
| Q |
456 |
ttccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttc |
555 |
Q |
| |
|
||||| ||||| ||| ||||||| || |||||||| | ||||| |||||||||||||| || |||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
1965232 |
ttccaaccacagtgactcaagaaccctccaattgaactatgactaaggatttgaatctgaggtgcccatgatgtaatgacaaaacctttctccttcgttc |
1965133 |
T |
|
| Q |
556 |
tctccaagaacccagatggtaaaaactgcaaagtgtcaatgtcattttctgctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaac |
655 |
Q |
| |
|
||||||| ||||||||||||||||| | ||||| |||| |||||||| ||||||||||||| |||||||||||||||| ||||| ||||||| || ||| |
|
|
| T |
1965132 |
tctccaaaaacccagatggtaaaaatttcaaagggtcaccgtcattttgtgctgaaagatatgctgcactagatgaactactacttggtgctcacacaac |
1965033 |
T |
|
| Q |
656 |
ccacgagaattttttattactcaattccaaacctaaagccagctccacaatttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaact |
755 |
Q |
| |
|
||| |||||| | |||||||||||| || || | |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1965032 |
ccataggaatttctgattactcaattctaaccccagagccagctgaacaatttgttcgtgtgaaagtgtaccaccactcccgaaagacacatacaaaact |
1964933 |
T |
|
| Q |
756 |
gagcaaggctgctgtttatccaaccaggccagacactccaagccattagcatcatcacctgaacttgtttctgtttggataattggtccaacaggataca |
855 |
Q |
| |
|
|| |||| || ||||| || ||||| | |||||||||||| |||||||||||| | |||| |||| |||| | ||| || |||||||||||||||| |
|
|
| T |
1964932 |
gaacaagattgttgtttgtctaaccatgacagacactccaaaccattagcatcacggtcagaacatgttactgtatcgatgatgggtccaacaggataca |
1964833 |
T |
|
| Q |
856 |
ctggagggttgtcacttccctcctctttcatttcacttataggtcccatctccaattccaggaagctattaacaa |
930 |
Q |
| |
|
| | ||||||| ||||||| |||||| || | | ||||||||||||| |||| ||| | |||||||||||||| |
|
|
| T |
1964832 |
cagaagggttgccacttccttcctctgtcggtgcttttataggtcccatttccatttctaagaagctattaacaa |
1964758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 156 - 720
Target Start/End: Complemental strand, 2437268 - 2436704
Alignment:
| Q |
156 |
ctccacttgagtgctaattgagaaagagtctttgtagtagaaccatcttctttatgtacactactagcagcttctttaaattccttcatattattacgca |
255 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||| | ||||||||||||||| || || || |||||||||||| | ||| ||||||||| | | | |
|
|
| T |
2437268 |
ctccacttgagtgttaattgagaaatagtctttgtcgaagaaccatcttctttgagtgcattagaagcagcttcttttagttctttcatattactccac- |
2437170 |
T |
|
| Q |
256 |
gtttcccaccttcttccccttccatgagacacttgatcaactcagcaatttctaccctttccacaatgccattctcgttaactcttggcctcagtcccac |
355 |
Q |
| |
|
||| |||||| |||||||||||||||||||||| || ||||| ||||||||||||||||||||||| || | ||||||||||||||||||||| |
|
|
| T |
2437169 |
-tttag----ttcttctccttccatgagacacttgatcaccttagcaacctctaccctttccacaatgccattttcatgaactcttggcctcagtcccac |
2437075 |
T |
|
| Q |
356 |
ttttaggccttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggccatgtgattagtggcacaccatgcaacacactctcaagggttgaa |
455 |
Q |
| |
|
|||||| || |||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2437074 |
ttttagtccctcactcaacaaaaccgaattcgttctctgctcggcaaaaagaggccatgtgattagtggcacaccatgcaccacactctcaagggttgaa |
2436975 |
T |
|
| Q |
456 |
ttccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttc |
555 |
Q |
| |
|
||||||||||| ||| ||||||| ||||||| ||| ||||||| |||||||||| ||| || |||||||||| |||||| | |||| |||||||||| |
|
|
| T |
2436974 |
ttccagccacagtgactcaagaaaccaccaactgatctgtgactaaggatttgaacctgtggtgcccatgatggaataaccatcccttgatccttggttc |
2436875 |
T |
|
| Q |
556 |
tctccaagaacccagatggtaaaaactgcaaagtgtcaatgtcattttctgctgaaa--ga----tatcctgcactagatgaactgctactcggtgctcg |
649 |
Q |
| |
|
|||| | ||||||| |||||||||| ||||||| ||||| ||||||| |||||||| || ||| |||||||||||||||| ||| | ||||||| |
|
|
| T |
2436874 |
tctctatgaacccacatggtaaaaattgcaaagggtcaacatcattttgtgctgaaactgaaaagtatgctgcactagatgaactactatttggtgctct |
2436775 |
T |
|
| Q |
650 |
caaaacccacgagaattttttattactcaattccaaacctaaagccagctccacaatttgttcgtgtgaaa |
720 |
Q |
| |
|
| |||||| ||||||| | ||||||| |||||| ||| ||||||||||| ||||||||||| ||||||| |
|
|
| T |
2436774 |
tacaacccataagaatttctgattactcgattccagaccgaaagccagctcaacaatttgttcttgtgaaa |
2436704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 750 - 930
Target Start/End: Complemental strand, 2433163 - 2432983
Alignment:
| Q |
750 |
aaaactgagcaaggctgctgtttatccaaccaggccagacactccaagccattagcatcatcacctgaacttgtttctgtttggataattggtccaacag |
849 |
Q |
| |
|
|||||||||||||| || || | ||||||||| | |||||||||||| |||||||||||| | ||||||||| ||| ||||| || |||||||||| |
|
|
| T |
2433163 |
aaaactgagcaaggttgttggtcatccaaccatgacagacactccaacatattagcatcatcgtcagaacttgttattgtctggatgatgggtccaacag |
2433064 |
T |
|
| Q |
850 |
gatacactggagggttgtcacttccctcctctttcatttcacttataggtcccatctccaattccaggaagctattaacaa |
930 |
Q |
| |
|
||||||| |||| || |||||||| || ||| ||| | | ||||||| ||| | |||| ||| | |||||||||||||| |
|
|
| T |
2433063 |
gatacacaagaggattttcacttccttcatctgtcagtgcttttataggacccctttccatttctaagaagctattaacaa |
2432983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 440 - 507
Target Start/End: Original strand, 3770193 - 3770260
Alignment:
| Q |
440 |
actctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggattt |
507 |
Q |
| |
|
||||||||| ||||||||||| |||||||| || || |||||||| |||| |||||||||||||||| |
|
|
| T |
3770193 |
actctcaagtgttgaattccaaccacaatgtgttaaaaatccacctgttgaattgtgacttaggattt |
3770260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 365 - 491
Target Start/End: Original strand, 10201811 - 10201937
Alignment:
| Q |
365 |
ttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattccagcca |
464 |
Q |
| |
|
||||||||| ||||| |||||| | | ||||||||| | || ||||||| || | |||||||||| || |||||||||||| ||||||||||| ||| |
|
|
| T |
10201811 |
ttcactcaataaaacagcattcatcttttgctcagcatagagtggccatgcaatcaaaggcacaccattcaccacactctcaagagttgaattccaacca |
10201910 |
T |
|
| Q |
465 |
caatgagtcaagaatccaccaattgag |
491 |
Q |
| |
|
|||||| ||| || || ||||||||| |
|
|
| T |
10201911 |
caatgactcacaaaccctccaattgag |
10201937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 365 - 491
Target Start/End: Original strand, 10208884 - 10209010
Alignment:
| Q |
365 |
ttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattccagcca |
464 |
Q |
| |
|
||||||||| ||||| |||||| | | ||||||||| | || ||||||| || | |||||||||| || |||||||||||| ||||||||||| ||| |
|
|
| T |
10208884 |
ttcactcaataaaacagcattcatcttttgctcagcatagagtggccatgcaatcaaaggcacaccattcaccacactctcaagagttgaattccaacca |
10208983 |
T |
|
| Q |
465 |
caatgagtcaagaatccaccaattgag |
491 |
Q |
| |
|
|||||| ||| || || ||||||||| |
|
|
| T |
10208984 |
caatgactcacaaaccctccaattgag |
10209010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 440 - 507
Target Start/End: Complemental strand, 3708002 - 3707935
Alignment:
| Q |
440 |
actctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggattt |
507 |
Q |
| |
|
||||||||| || |||||||| |||||||| || || |||||||| |||| |||||||||||||||| |
|
|
| T |
3708002 |
actctcaagcgtcgaattccaaccacaatgtgttaaaaatccacctgttgaattgtgacttaggattt |
3707935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 440 - 582
Target Start/End: Original strand, 3777860 - 3778002
Alignment:
| Q |
440 |
actctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcggcgcccatgatgtaataacaaaa |
539 |
Q |
| |
|
|||||| || || |||||||| |||||||| || || |||||||| |||| |||| |||||||||||| ||||||| ||||| | | || ||| || |
|
|
| T |
3777860 |
actctccagtgtcgaattccaaccacaatgtgttaaaaatccaccggttgaaatgtggcttaggatttgagtctgcggggcccaaaaaggaacaactaac |
3777959 |
T |
|
| Q |
540 |
cctttctccttggttctctccaagaacccagatggtaaaaact |
582 |
Q |
| |
|
|||| || ||||||||||| |||||||| ||||||||||| |
|
|
| T |
3777960 |
ccttgttctttggttctctctaagaacccttgtggtaaaaact |
3778002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 441 - 523
Target Start/End: Original strand, 33005106 - 33005188
Alignment:
| Q |
441 |
ctctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcggcgccca |
523 |
Q |
| |
|
||||| || ||||||||||| |||||||| || || ||||||||| |||| |||| |||||||||||| |||| || ||||| |
|
|
| T |
33005106 |
ctctcgagtgttgaattccaaccacaatgtgttaaaaatccaccagttgaagtgtggcttaggatttgagtctgtggtgccca |
33005188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 257; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-142
Query Start/End: Original strand, 157 - 795
Target Start/End: Complemental strand, 5906521 - 5905886
Alignment:
| Q |
157 |
tccacttgagtgctaattgagaaagagtctttgtagtagaaccatcttctttatgtacactactagcagcttctttaaattccttcatattattacgcag |
256 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||| ||| ||| |||||||||| | || || || |||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
5906521 |
tccacttgtgtgctaattgagaaacagtctttctagaagacccatcttcttgaagtgcattagtagctgcttctttcaattccttcatattattgcgcaa |
5906422 |
T |
|
| Q |
257 |
tttcccaccttcttccccttccatgagacacttgatcaactcagcaatttctaccctttccacaatgccattctcgttaactcttggcctcagtcccact |
356 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||| || || || |||| |||||||||||||||||| || |||||||||||||||| |||||| |
|
|
| T |
5906421 |
tttctcacattcttccccttccatgagacacttgatcaccttagaaacctctatcctttccacaatgccattttcattaactcttggcctcactcccacc |
5906322 |
T |
|
| Q |
357 |
tttaggccttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggccatgtgattagtggcacaccatgcaacacactctcaagggttgaat |
456 |
Q |
| |
|
|||||||| ||||||| || || |||||| |||||||||||||||| ||||||||||||||||||||||||||||||| | | ||||||||| ||||| |
|
|
| T |
5906321 |
tttaggccctcactcagcacaaatgcattcattctctgctcagcaaacagaggccatgtgattagtggcacaccatgcatcgcgctctcaaggattgaac |
5906222 |
T |
|
| Q |
457 |
tccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttct |
556 |
Q |
| |
|
|||| ||||||||| ||||||||||||||| ||| ||||||| ||||||| |||||| || |||||||||| |||||| | |||| |||||||||||| |
|
|
| T |
5906221 |
tccaaccacaatgactcaagaatccaccaactgatatgtgactaaggatttcaatctgaggtgcccatgatggaataaccattccttgctccttggttct |
5906122 |
T |
|
| Q |
557 |
ctccaagaacccagatggtaaaaactgcaaagtgtcaatgtcattttctgctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaacc |
656 |
Q |
| |
|
||||||||||||||||||||||| |||| || |||| || |||| ||||||||||||| | ||| | |||| ||||| ||||||| | |||| |
|
|
| T |
5906121 |
ctccaagaacccagatggtaaaacctgcgaaagatcaacatcgttttgtgctgaaagatatgcaccacatgctgaa---ctacttggtgctcttacaacc |
5906025 |
T |
|
| Q |
657 |
cacgagaattttttattactcaattccaaacctaaagccagctccacaatttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactg |
756 |
Q |
| |
|
|| ||||||| | |||||||||||||||||| | ||| ||||| || ||||||| |||||||||| |||||| || || ||||| ||||||||||||| |
|
|
| T |
5906024 |
cataagaatttatgattactcaattccaaaccaatagctagctcatcagtttgttcttgtgaaagtgcaccaccgcttccaaaagaaacatacaaaactg |
5905925 |
T |
|
| Q |
757 |
agcaaggctgctgtttatccaaccaggccagacactcca |
795 |
Q |
| |
|
| ||||||||||||||||| ||||| | || |||||||| |
|
|
| T |
5905924 |
aacaaggctgctgtttatctaaccatgtcaaacactcca |
5905886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 156 - 795
Target Start/End: Complemental strand, 5903038 - 5902402
Alignment:
| Q |
156 |
ctccacttgagtgctaattgagaaagagtctttgtagtagaaccatcttctttatgtacactactagcagcttctttaaattccttcatattattacgca |
255 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||| ||| || |||||||| | || || ||| ||||||||| ||||||||||||||||| |||| |
|
|
| T |
5903038 |
ctccacttgagtgctaattgagaaatggtctttctagaagacccgtcttctttgagcgcattagtagaagcttcttttaattccttcatattattgcgca |
5902939 |
T |
|
| Q |
256 |
gtttcccaccttcttccccttccatgagacacttgatcaactcagcaatttctaccctttccacaatgccattctcgttaactcttggcctcagtcccac |
355 |
Q |
| |
|
||| ||| |||||| ||||||||||||| ||||||||| | || |||||| ||||||| ||||||||||| || ||||| ||||||||||||||||| |
|
|
| T |
5902938 |
aattctcacattcttctccttccatgagacccttgatcaatttagaaatttcctccctttcaacaatgccattatcattaacccttggcctcagtcccac |
5902839 |
T |
|
| Q |
356 |
ttttaggccttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggccatgtgattagtggcacaccatgcaacacactctcaagggttgaa |
455 |
Q |
| |
|
||| ||||| ||||||| || ||| |||||| |||| |||||| |||| | ||||||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
5902838 |
tttaaggccctcactcagcacaactgcattcattctttgctcaccaaacaaaggccatgtgattagtggcacaccatgcatcacactctcaaggattgaa |
5902739 |
T |
|
| Q |
456 |
ttccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttc |
555 |
Q |
| |
|
||||||||||| ||| ||||||||||||||| ||| ||||||| || ||| |||||| || |||||||||| |||||| | |||| ||||||||||| |
|
|
| T |
5902738 |
ttccagccacagtgactcaagaatccaccaactgatctgtgactaagtgtttcaatctgaggtgcccatgatggaataaccatcccttgctccttggttc |
5902639 |
T |
|
| Q |
556 |
tctccaagaacccagatggtaaaaactgcaaagtgtcaatgtcattttctgctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaac |
655 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||| | |||| | |||| ||||| ||||||| | ||| |
|
|
| T |
5902638 |
tctccaagaacccaggtggtaaaaactgcaaaagatcaacatcattttctgctgaaagatatgcaccactggctgaa---ctacttggtgctcttacaac |
5902542 |
T |
|
| Q |
656 |
ccacgagaattttttattactcaattccaaacctaaagccagctccacaatttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaact |
755 |
Q |
| |
|
||| ||||||| | |||||||||||||||||| | ||||| ||| |||||||||| |||||||||| ||||||||| || ||||| |||||||||||| |
|
|
| T |
5902541 |
ccataagaatttatgattactcaattccaaaccaatagccaactcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacatacaaaact |
5902442 |
T |
|
| Q |
756 |
gagcaaggctgctgtttatccaaccaggccagacactcca |
795 |
Q |
| |
|
|| ||||| || ||||||| ||||| | ||||||||||| |
|
|
| T |
5902441 |
gaacaaggttgttgtttatgtaaccatgtcagacactcca |
5902402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 449 - 490
Target Start/End: Complemental strand, 3557 - 3516
Alignment:
| Q |
449 |
ggttgaattccagccacaatgagtcaagaatccaccaattga |
490 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3557 |
ggttgaattccatccacaatgagtcaagaatccaccaattga |
3516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000006; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 449 - 490
Target Start/End: Original strand, 4461417 - 4461458
Alignment:
| Q |
449 |
ggttgaattccagccacaatgagtcaagaatccaccaattga |
490 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4461417 |
ggttgaattccatccacaatgagtcaagaatccaccaattga |
4461458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 449 - 489
Target Start/End: Original strand, 4622436 - 4622476
Alignment:
| Q |
449 |
ggttgaattccagccacaatgagtcaagaatccaccaattg |
489 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4622436 |
ggttgaattccatccacaatgagtcaagaatccaccaattg |
4622476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 449 - 490
Target Start/End: Original strand, 4557419 - 4557460
Alignment:
| Q |
449 |
ggttgaattccagccacaatgagtcaagaatccaccaattga |
490 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4557419 |
ggttgagttccatccacaatgagtcaagaatccaccaattga |
4557460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 449 - 490
Target Start/End: Original strand, 4592525 - 4592566
Alignment:
| Q |
449 |
ggttgaattccagccacaatgagtcaagaatccaccaattga |
490 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4592525 |
ggttgagttccatccacaatgagtcaagaatccaccaattga |
4592566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 451 - 490
Target Start/End: Complemental strand, 4490191 - 4490152
Alignment:
| Q |
451 |
ttgaattccagccacaatgagtcaagaatccaccaattga |
490 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4490191 |
ttgagttccatccacaatgagtcaagaatccaccaattga |
4490152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 449 - 487
Target Start/End: Complemental strand, 4267004 - 4266966
Alignment:
| Q |
449 |
ggttgaattccagccacaatgagtcaagaatccaccaat |
487 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
4267004 |
ggttgaattccatccgcaatgagtcaagaatccaccaat |
4266966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 444 - 490
Target Start/End: Complemental strand, 4299664 - 4299618
Alignment:
| Q |
444 |
tcaagggttgaattccagccacaatgagtcaagaatccaccaattga |
490 |
Q |
| |
|
|||| |||||| ||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
4299664 |
tcaatggttgagttccatccacagtgagtcaagaatccaccaattga |
4299618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 444 - 490
Target Start/End: Original strand, 4626240 - 4626286
Alignment:
| Q |
444 |
tcaagggttgaattccagccacaatgagtcaagaatccaccaattga |
490 |
Q |
| |
|
|||| |||||| ||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
4626240 |
tcaatggttgagttccatccacaatgagttaagaatccaccaattga |
4626286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 450 - 487
Target Start/End: Original strand, 4493250 - 4493287
Alignment:
| Q |
450 |
gttgaattccagccacaatgagtcaagaatccaccaat |
487 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
4493250 |
gttgagttccatccacaatgagtcaagaatccaccaat |
4493287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 449 - 490
Target Start/End: Original strand, 4506151 - 4506192
Alignment:
| Q |
449 |
ggttgaattccagccacaatgagtcaagaatccaccaattga |
490 |
Q |
| |
|
|||||| ||||| || |||||||||||||||||||||||||| |
|
|
| T |
4506151 |
ggttgagttccatccgcaatgagtcaagaatccaccaattga |
4506192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 449 - 490
Target Start/End: Original strand, 4585930 - 4585971
Alignment:
| Q |
449 |
ggttgaattccagccacaatgagtcaagaatccaccaattga |
490 |
Q |
| |
|
|||||| ||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
4585930 |
ggttgagttccatccacagtgagtcaagaatccaccaattga |
4585971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 449 - 490
Target Start/End: Complemental strand, 4613556 - 4613515
Alignment:
| Q |
449 |
ggttgaattccagccacaatgagtcaagaatccaccaattga |
490 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| |||||||| |
|
|
| T |
4613556 |
ggttgagttccatccacaatgagtcaagaatccgccaattga |
4613515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 5890607 - 5890659
Alignment:
| Q |
156 |
ctccacttgagtgctaattgagaaagagtctttgtagtagaaccatcttcttt |
208 |
Q |
| |
|
||||||||||||||||||||||||| | | ||||||| ||||||||||||||| |
|
|
| T |
5890607 |
ctccacttgagtgctaattgagaaaaaatgtttgtagaagaaccatcttcttt |
5890659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 444 - 490
Target Start/End: Complemental strand, 41511490 - 41511444
Alignment:
| Q |
444 |
tcaagggttgaattccagccacaatgagtcaagaatccaccaattga |
490 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
41511490 |
tcaagtgttgaattccaaccacaatgagtcaaaaatccaccaattga |
41511444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 450 - 490
Target Start/End: Original strand, 3086715 - 3086755
Alignment:
| Q |
450 |
gttgaattccagccacaatgagtcaagaatccaccaattga |
490 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3086715 |
gttgagttccatccacaatgagtcaagaatccaccaattga |
3086755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 444 - 490
Target Start/End: Complemental strand, 4529 - 4483
Alignment:
| Q |
444 |
tcaagggttgaattccagccacaatgagtcaagaatccaccaattga |
490 |
Q |
| |
|
|||| |||||| ||||| || |||||||||||||||||||||||||| |
|
|
| T |
4529 |
tcaatggttgagttccatccgcaatgagtcaagaatccaccaattga |
4483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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