View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11499_low_14 (Length: 307)
Name: NF11499_low_14
Description: NF11499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11499_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 20 - 297
Target Start/End: Complemental strand, 7488642 - 7488365
Alignment:
| Q |
20 |
tttcaaacaaataaagtttgtttcattgactcctaatttgtaggttacttcaacagttgaaaaattgagctcagaagggatatcagagaagatgaattta |
119 |
Q |
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| T |
7488642 |
tttcaaacaaataaagtttgtttcattgactcctaatttgtaggttacttcaacagttgaaaaattgagcttagaagggatatcagagaagatgaattta |
7488543 |
T |
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| Q |
120 |
ggaatagatttagagactgagattttggtgtggcttcctctaaattcattgatgggttttagatgtgttcaacggtcttggaatgatcttactcagaacc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7488542 |
ggaatagatttagagactgagattttggtgtggcttcctctaaattcattgatgggttttagatgtgttcaacggtcttggaatgatcttactcagaacc |
7488443 |
T |
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| Q |
220 |
ccacctttctgaaaaggaggcacataaacatgtctgacagtcctaatctcatgatccttcatgaaacaaaaccctatg |
297 |
Q |
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| T |
7488442 |
ccacctttctgaaaaggaggcacataaacatgtctgatagtcctaatctcatgatccttcatgaaacaaaaccctatg |
7488365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 98 - 235
Target Start/End: Complemental strand, 7475700 - 7475563
Alignment:
| Q |
98 |
gatatcagagaagatgaatttaggaatagatttagagactgagattttggtgtggcttcctctaaattcattgatgggttttagatgtgttcaacggtct |
197 |
Q |
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|||||| |||||||||| |||||||||||||||||||| ||||||||| |||||||| || |||| ||||||||| | |||||| ||||||||| ||| |
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| T |
7475700 |
gatatcggagaagatgagtttaggaatagatttagagattgagattttagtgtggctgccattaaagtcattgatgagctttagacttgttcaacgttct |
7475601 |
T |
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| Q |
198 |
tggaatgatcttactcagaaccccacctttctgaaaag |
235 |
Q |
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| T |
7475600 |
tggaatgatcttattcagacccccacctttctgaaaag |
7475563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 123 - 252
Target Start/End: Original strand, 7873146 - 7873275
Alignment:
| Q |
123 |
atagatttagagactgagattttggtgtggcttcctctaaattcattgatgggttttagatgtgttcaacggtcttggaatgatcttactcagaacccca |
222 |
Q |
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|||||||||||||| |||||||||||||| |||| |||||| |||||||| |||||||||||||| |||| |||||||||||||||| |||||| || | |
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| T |
7873146 |
atagatttagagacggagattttggtgtgacttcttctaaagtcattgattcgttttagatgtgttgaacgttcttggaatgatcttattcagaaaccta |
7873245 |
T |
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| Q |
223 |
cctttctgaaaaggaggcacataaacatgt |
252 |
Q |
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| T |
7873246 |
cctttatgaaaagaaggcagatgaacatgt |
7873275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 99 - 278
Target Start/End: Original strand, 6943480 - 6943659
Alignment:
| Q |
99 |
atatcagagaagatgaatttaggaatagatttagagactgagattttggtgtggcttcctctaaattcattgatgggttttagatgtgttcaacggtctt |
198 |
Q |
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||||| |||| | |||||||||| ||||||||||||| |||||||||| |||||| || ||||| ||||||||| ||| |||||||||||||| |||| |
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| T |
6943480 |
atatcggagatggtgaatttagggttagatttagagacggagattttggcgtggctgccactaaagtcattgatgcttttcagatgtgttcaacgatctt |
6943579 |
T |
|
| Q |
199 |
ggaatgatcttactcagaaccccacctttctgaaaaggaggcacataaacatgtctgacagtcctaatctcatgatcctt |
278 |
Q |
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|||||| |||| ||||| ||| ||||||||||| || ||||||| || ||| ||| ||||||| ||||||||||||| |
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| T |
6943580 |
ggaatgttcttgttcagagccctgcctttctgaaacggcggcacatgaatatgcatgatagtcctagtctcatgatcctt |
6943659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 7873012 - 7873048
Alignment:
| Q |
30 |
ataaagtttgtttcattgactcctaatttgtaggtta |
66 |
Q |
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|||| |||||||||||||||||||||||||| ||||| |
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| T |
7873012 |
ataacgtttgtttcattgactcctaatttgtcggtta |
7873048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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