View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11499_low_15 (Length: 301)
Name: NF11499_low_15
Description: NF11499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11499_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 34274035 - 34274308
Alignment:
| Q |
18 |
ctatcaaatattttcattgttcatttcatataagttccccgtgtacgatctcttctcgtgaaccaaaattattgaatggtgctcctatagaaaaacaata |
117 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34274035 |
ctatcaaatattttcattgctcatttcatataagttccccgtgtacgatctcttctcgtgaaccaaaattattgactggtgctcctatagaaaaacaata |
34274134 |
T |
|
| Q |
118 |
tgatggtgaaatatacagaagccaaataaaaaggggaaacactagcataccaataatggtatccgtacattttttgcatttgaataatgttatccgtaca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34274135 |
tgatggtgaaatatacagaagccaaataaaaaggggaaacactagcataccaataatggtatccgtacattttttgcatttgaataatgttatccgtaca |
34274234 |
T |
|
| Q |
218 |
ctataataatttgtaaatttgcacgtaccctaaaaataataatatttgccacacctctagcatcttcatttctt |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34274235 |
ctataataatttgtaaatttgcacgtaccctaaaaataataatatttgccacacctctagcatcttcatttctt |
34274308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University