View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11499_low_16 (Length: 282)
Name: NF11499_low_16
Description: NF11499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11499_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 20 - 272
Target Start/End: Original strand, 8438928 - 8439174
Alignment:
| Q |
20 |
gcaaacccctatttattttatttctaagttttgtgcaggttgtttctatcttttacttagataatcgtttcaagccaatgatattgtaaataagcttaag |
119 |
Q |
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| T |
8438928 |
gcaaacccctatttattgtatttctaagttttgtgcaggttgtttctatcttt-acttagataatcgtttcaagccaatgatattgtaaataagcttaag |
8439026 |
T |
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| Q |
120 |
gaattcacttctttcagctgggacccaatccattttaaaataattgtaaaagatgtgttaagtggtgattttatcactaataatagaaaaggaaaataat |
219 |
Q |
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| T |
8439027 |
gaattcacttctttcagctgggacccaatccattttaaaataattgtaaaagatttgttcagtggtgattttatcactaataatagaaaaggaaaataat |
8439126 |
T |
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| Q |
220 |
gatattgcattgatcaaattaaataccttcctcatagaagacccggacctttg |
272 |
Q |
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| T |
8439127 |
gatattgcattgatc-----aaatacctttctcatagaagacccggacctttg |
8439174 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 31947416 - 31947332
Alignment:
| Q |
156 |
aaaataattgtaaaagatgtgttaagtggtgattttatcactaataata--gaaaaggaaaataatgatattgcattgatcaaat |
238 |
Q |
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| T |
31947416 |
aaaatgattgtgaaagatatgttcaatggtgattttgtcactaataataatagaaaggaaaacaatgatattgcattgataaaat |
31947332 |
T |
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