View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11499_low_17 (Length: 268)
Name: NF11499_low_17
Description: NF11499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11499_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 46227060 - 46226816
Alignment:
| Q |
8 |
agaagcagagataaaaagaaagatagattaaaatcacatttacaagtaccaatgaagtgtaagaccatgttttagttaaaaggtctaagttgaaccaacg |
107 |
Q |
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| T |
46227060 |
agaagaagagataaaaagaaagatagattaaaatcacatttacaagtaccaatgaagtgtaagaccatgttttagttaaaaggtctaagttgaaccaacg |
46226961 |
T |
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| Q |
108 |
nnnnnnnn-cattctactcaaagaaaacacatgcattcttccctctaataatttcttgcctacaattttattttgtcatccaaacaaaaccttagtgtat |
206 |
Q |
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| T |
46226960 |
aaaaaaaaacattctactcaaagaaaacacatgcattcttccctctaataatttcttgcctacaattttattttgtcatccaaacaaaaccttagtgtat |
46226861 |
T |
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| Q |
207 |
ttttctttgttatcatcggtcataataaaggtttttgttgctagt |
251 |
Q |
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| T |
46226860 |
ttttctttgttatcatcggtcataataaaggtttttgttgctagt |
46226816 |
T |
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