View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11499_low_2 (Length: 662)
Name: NF11499_low_2
Description: NF11499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11499_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Original strand, 10970311 - 10970757
Alignment:
| Q |
1 |
tgaacaacttactcgattaaaatacaggaacaacatcttttcctcatctccagcgcttcttctgaaaatttattagaaaatggtttataaacaagtgaag |
100 |
Q |
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| T |
10970311 |
tgaacaacttactcgattaaaatacaggaacaacatcttttcctcatctccagcgcttcttctgaaaatttattagaaaatggtttataaacaagtgaag |
10970410 |
T |
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| Q |
101 |
cagcatatgtatttgttcatataaatttccatttcagtactaaagatgtttcaagtattcaattacattagcgattctagattctacacagtcaggaaaa |
200 |
Q |
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| T |
10970411 |
cagcataggtatttgttcatataaatttccatttcagtactaaagatgtttcaagtattcaattacattagcgattctagattctacacagtcaggaaaa |
10970510 |
T |
|
| Q |
201 |
gcatgcagtt--gagatcccaactgttaattgaagatcagatgacttgtattacgagatgtatattttaaagtggatttggtaaaatcataatacaagtc |
298 |
Q |
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| T |
10970511 |
gcatgcagtcaagagatcccaactgttaattgaagatcagatgacttgtattacgagatgtatattttaaagtggatttggtaaaatcataatacaagtc |
10970610 |
T |
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| Q |
299 |
taatcttcatcttatagtcgagatccatgaccacatcactgcacaaaatccaaacccttaacaaataaggcttcaatgaaattcaatgcatagattaaca |
398 |
Q |
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| T |
10970611 |
taatcttcatcttatagtcgagatccatgaccacatcactgcacaaaatccaaacccttaacaaataaggcttcaatgaaattcaatgcattgattaaca |
10970710 |
T |
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| Q |
399 |
tgatctcatgaaatctaattgagcaatcaattttcattagaatttag |
445 |
Q |
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| T |
10970711 |
tgatctcatgaaatctaattgagcaatcaatttccattagaatttag |
10970757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 512 - 643
Target Start/End: Original strand, 10970825 - 10970956
Alignment:
| Q |
512 |
gatctgtatagacaggttcattccaactcgcacaatcaagtccaagcttctcaaatgctgcaatcacaacatcaaattcgaaaaaatgacaccgcattac |
611 |
Q |
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| T |
10970825 |
gatctgtatagacaggttcattccaactcgcacaatcaagtccaagcttctcaaatgctgcaatcacaacatcaaattcgaaaaaatgacaccgcattac |
10970924 |
T |
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| Q |
612 |
actccatgaacacagaaaaacacaaacacaca |
643 |
Q |
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| T |
10970925 |
actccatgaacacagaaaaacacaaacacaca |
10970956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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