View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11499_low_7 (Length: 486)
Name: NF11499_low_7
Description: NF11499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11499_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Complemental strand, 1320323 - 1319854
Alignment:
| Q |
1 |
tcaacaatggagttggtagaaaaatgataataacgagagaatcaaaccactgccaaaaatcttttgacaaaagatcaatgcagataggctacaaatggaa |
100 |
Q |
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| T |
1320323 |
tcaacaatggagttggtagaaaaatgataataacgagagaatcaaaccactgccaaaaatcttttgacaaaagatcaatgcagataggctacaaatggaa |
1320224 |
T |
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| Q |
101 |
acaatattttaaaattagacattgtgagtatattttttctgactttgtagattgttctcaaatagaattataacgttaatattttaaatatggtcatgac |
200 |
Q |
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| T |
1320223 |
acaatattttaaaattagacattgtgagtatattttttctgactttttagattgttctcaaatagaattataacgttaatattttaaaaatggtcatgac |
1320124 |
T |
|
| Q |
201 |
tcttgacaaaatttacttatataatctttatgataaatgttagagactaaattgataactaagccctagttaattttttaaatataattacctgatgata |
300 |
Q |
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| T |
1320123 |
tcttgacgaaatttacttatataatctttatgataaatgttagagactaaattgataactaa-acctagttaattttttaaatataatgacctgatgata |
1320025 |
T |
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| Q |
301 |
gttaatagtaaatggttaaatacaaagagcaacttaacaatctaatag--attttgtttttgaaagattaacaatctaatagatagaatcaaatgatcgt |
398 |
Q |
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| T |
1320024 |
attaatagtaaatggttaaatacaaatagcaacttaacaatctaatagtttttttttttttgaaagattaacaatctaatagatagaatcaaatgatcgt |
1319925 |
T |
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| Q |
399 |
tttaaaaaattcataatc-tataaacctattttgagaacgcaaaatcatggactaattggtttactttaca |
468 |
Q |
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| T |
1319924 |
tttaaaaaattcataatcttataaacctattttgagaacgcaaaatcatggactaattggtttactttaca |
1319854 |
T |
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