View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11499_low_8 (Length: 464)
Name: NF11499_low_8
Description: NF11499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11499_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 17 - 426
Target Start/End: Complemental strand, 51718859 - 51718444
Alignment:
| Q |
17 |
ctatgtacacgtatggtgcgttgatttcatcaatattgtttgtgtcttacttgtatagatagatattt-gttttgcatgcatgcatgggaaccgtggcag |
115 |
Q |
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| T |
51718859 |
ctatgtacacgtatggtgcgttgatttcatcaatattgtttgtgtcttacttgtatagatagatattttgttttgcatgcatgcatgggaaccgtggcag |
51718760 |
T |
|
| Q |
116 |
agtggccaagttgttgactccaattaattaaatcaatattgtggcgctcggtgatttcaacaaaccaaaacactttgtttactcctcttctttcagaaag |
215 |
Q |
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|||||||||||| || ||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
51718759 |
agtggccaagttttttactccaattaattaaatcaatattgaggcgctcgctgatttcaacaaaccaaa-cactttgtttactcctcttctttcagaaag |
51718661 |
T |
|
| Q |
216 |
atcgatgtagtttgaacaccaagaaaaatgggtagtaatttatacacacatttaaactttcattttgagtaacgatatttatacgactacaatccctaga |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51718660 |
atcgatgtagtttgaacaccaagaaaaatgggtagtaatttatacacacatttaaactttcattttgagtaacgatatttatacgactacaatccctaga |
51718561 |
T |
|
| Q |
316 |
caacattctttctctttttattgataaaaaataatagagagatgaagatagtgtaaaaacacaaag------agaatgtatgagagagttgtctcaaaat |
409 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||| |||||||||||||||| |
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| T |
51718560 |
caacattctctctctttttattgataaaaaataatagagagatgaagataatgtaaaagcacaaagagaaagagaatgtatgaaagagttgtctcaaaat |
51718461 |
T |
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| Q |
410 |
attgtagaaatacaatt |
426 |
Q |
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|||||| |||||||||| |
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| T |
51718460 |
attgtaaaaatacaatt |
51718444 |
T |
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