View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1149_high_14 (Length: 575)

Name: NF1149_high_14
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1149_high_14
NF1149_high_14
[»] chr6 (14 HSPs)
chr6 (1-391)||(34819871-34820261)
chr6 (247-575)||(34819841-34820169)
chr6 (33-115)||(34820530-34820612)
chr6 (309-391)||(34820530-34820612)
chr6 (33-114)||(34820296-34820377)
chr6 (309-390)||(34820296-34820377)
chr6 (39-115)||(34820653-34820729)
chr6 (315-391)||(34820653-34820729)
chr6 (175-239)||(34835101-34835165)
chr6 (451-515)||(34835101-34835165)
chr6 (76-115)||(34820807-34820846)
chr6 (352-391)||(34820807-34820846)
chr6 (33-115)||(34820413-34820495)
chr6 (309-391)||(34820413-34820495)


Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-153; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 34819871 - 34820261
Alignment:
Q  1 tcttccctttcttctttaaaggacatgcctcagcgagttgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatact 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||    
T  34819871 tcttccctttcttctttaaaggacatgcctcaacgagttgatggtcaatcttagcttgcaaaaccaccgcatacgtaccatcatcatttttggtgatact 34819970  T
Q  101 ctcgtcaataaaacttccagcaaagatttctgattcagacttagatcttcttattgcttttgcactaaacacatttattctcgttcctttatgttcttgg 200  Q
    |||||||| |||||| ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||    
T  34819971 ctcgtcaacaaaactcccagccaagatttctgattcagacttggatcttctaattgcttttgcactaaacacatttagtctcattcctttatgttcttgg 34820070  T
Q  201 cagctaactcttttctcaactggtggctttgtacaaatactatcatcattcttcttgtttgtctcgcctttatcactcttccctttcttctttaaaggac 300  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  34820071 cagctaactcttttctcagctggtggctttgtacaaatactaccatcattcttcttggttgtctcgcctttatcactcttccctttcttctttaaaggag 34820170  T
Q  301 atgcctcagcgagttgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatactctcgtcaataaaact 391  Q
    | |||||||||||||||||||||| || ||||| ||||  |||||   || ||||||||| |||||| ||||| |||||||||| ||||||    
T  34820171 acgcctcagcgagttgatggtcaacctcagcttccaaagtcacctatgacgtaccaacattattttttgtgatgctctcgtcaacaaaact 34820261  T

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Target: chr6; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 247 - 575
Target Start/End: Original strand, 34819841 - 34820169
Alignment:
Q  247 cattcttcttgtttgtctcgcctttatcactcttccctttcttctttaaaggacatgcctcagcgagttgatggtcaatcttagcttgcaaaaccacctc 346  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  34819841 cattcttcttgttggcctcgcctttatcactcttccctttcttctttaaaggacatgcctcaacgagttgatggtcaatcttagcttgcaaaaccaccgc 34819940  T
Q  347 atacataccaacatcatttttggtgatactctcgtcaataaaacttccagcaaagatttctgattcagacttagatcttcttattgcttttgcactaaac 446  Q
    |||| ||||| ||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||    
T  34819941 atacgtaccatcatcatttttggtgatactctcgtcaacaaaactcccagccaagatttctgattcagacttggatcttctaattgcttttgcactaaac 34820040  T
Q  447 acatttattctcgttcctttatgttcttggcagctaactcttttctcaactggtggctttgtacaaatactatcatcattcttcttgtttgtctcgcctt 546  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  34820041 acatttagtctcattcctttatgttcttggcagctaactcttttctcagctggtggctttgtacaaatactaccatcattcttcttggttgtctcgcctt 34820140  T
Q  547 tatcactcttccctttcttctttaaagga 575  Q
    |||||||||||||||||||||||||||||    
T  34820141 tatcactcttccctttcttctttaaagga 34820169  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 115
Target Start/End: Original strand, 34820530 - 34820612
Alignment:
Q  33 gcgagttgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatactctcgtcaataaaact 115  Q
    ||||| |||||||||| || | ||| ||||||||||||  ||||||| |||||| |||| |||||||| ||||||| ||||||    
T  34820530 gcgagctgatggtcaagctcaacttccaaaaccacctccgacataccgacatcaattttagtgatactttcgtcaacaaaact 34820612  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 391
Target Start/End: Original strand, 34820530 - 34820612
Alignment:
Q  309 gcgagttgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatactctcgtcaataaaact 391  Q
    ||||| |||||||||| || | ||| ||||||||||||  ||||||| |||||| |||| |||||||| ||||||| ||||||    
T  34820530 gcgagctgatggtcaagctcaacttccaaaaccacctccgacataccgacatcaattttagtgatactttcgtcaacaaaact 34820612  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 33 - 114
Target Start/End: Original strand, 34820296 - 34820377
Alignment:
Q  33 gcgagttgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatactctcgtcaataaaac 114  Q
    |||||||||||||||| |  | ||| |||| |||||||  || |||||| ||||||||| |||||||||||||||| |||||    
T  34820296 gcgagttgatggtcaaccacaacttccaaagccacctctgacgtaccaaaatcattttttgtgatactctcgtcaacaaaac 34820377  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 309 - 390
Target Start/End: Original strand, 34820296 - 34820377
Alignment:
Q  309 gcgagttgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatactctcgtcaataaaac 390  Q
    |||||||||||||||| |  | ||| |||| |||||||  || |||||| ||||||||| |||||||||||||||| |||||    
T  34820296 gcgagttgatggtcaaccacaacttccaaagccacctctgacgtaccaaaatcattttttgtgatactctcgtcaacaaaac 34820377  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 34820653 - 34820729
Alignment:
Q  39 tgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatactctcgtcaataaaact 115  Q
    ||||||| || || ||||| |||| |||||||  || |||||| ||||||||| |||||||||||||||| ||||||    
T  34820653 tgatggttaacctcagcttccaaagccacctctgacgtaccaatatcattttttgtgatactctcgtcaacaaaact 34820729  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 391
Target Start/End: Original strand, 34820653 - 34820729
Alignment:
Q  315 tgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatactctcgtcaataaaact 391  Q
    ||||||| || || ||||| |||| |||||||  || |||||| ||||||||| |||||||||||||||| ||||||    
T  34820653 tgatggttaacctcagcttccaaagccacctctgacgtaccaatatcattttttgtgatactctcgtcaacaaaact 34820729  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 34835101 - 34835165
Alignment:
Q  175 ttattctcgttcctttatgttcttggcagctaactcttttctcaactggtggctttgtacaaata 239  Q
    |||||||| ||||||||||||| || || |||||||||||||| || || | |||||||||||||    
T  34835101 ttattctcattcctttatgttcatgacacctaactcttttctcgaccggcgtctttgtacaaata 34835165  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 451 - 515
Target Start/End: Original strand, 34835101 - 34835165
Alignment:
Q  451 ttattctcgttcctttatgttcttggcagctaactcttttctcaactggtggctttgtacaaata 515  Q
    |||||||| ||||||||||||| || || |||||||||||||| || || | |||||||||||||    
T  34835101 ttattctcattcctttatgttcatgacacctaactcttttctcgaccggcgtctttgtacaaata 34835165  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 115
Target Start/End: Original strand, 34820807 - 34820846
Alignment:
Q  76 taccaacatcatttttggtgatactctcgtcaataaaact 115  Q
    |||||||||||||||| |||||||||||||||| ||||||    
T  34820807 taccaacatcattttttgtgatactctcgtcaacaaaact 34820846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 391
Target Start/End: Original strand, 34820807 - 34820846
Alignment:
Q  352 taccaacatcatttttggtgatactctcgtcaataaaact 391  Q
    |||||||||||||||| |||||||||||||||| ||||||    
T  34820807 taccaacatcattttttgtgatactctcgtcaacaaaact 34820846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 115
Target Start/End: Original strand, 34820413 - 34820495
Alignment:
Q  33 gcgagttgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatactctcgtcaataaaact 115  Q
    ||||| |||||||||| || | ||| ||||||||||||  |  ||||||||||||||||  ||| ||||||||||| ||||||    
T  34820413 gcgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgacactctcgtcaacaaaact 34820495  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 309 - 391
Target Start/End: Original strand, 34820413 - 34820495
Alignment:
Q  309 gcgagttgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatactctcgtcaataaaact 391  Q
    ||||| |||||||||| || | ||| ||||||||||||  |  ||||||||||||||||  ||| ||||||||||| ||||||    
T  34820413 gcgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgacactctcgtcaacaaaact 34820495  T

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