View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_high_15 (Length: 571)
Name: NF1149_high_15
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_high_15 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 324 - 571
Target Start/End: Complemental strand, 689474 - 689227
Alignment:
| Q |
324 |
atgtcagtaccagaatgaattggtgaatattttatttgttactgtcttgttccactggtaatgtatgtctctgatcaccattgttgtatgagttgtatac |
423 |
Q |
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| T |
689474 |
atgtcagtaccaggatgaattggtgaacattttatttgttactgtcttgttccaatggtaatgtatgtatctgataaccattgttgaatgagttgtatac |
689375 |
T |
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| Q |
424 |
agtgccttctgttagcacattttaaaccatgtgataggagcaattctactaagggtcgaactttgtataatgatttatgtttgaatacatttacataaaa |
523 |
Q |
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| T |
689374 |
agtgccttcttttagcacattttaaaccatgtgataggagcaattctactaagggtcaaactttgtataatgatttatgtttgagtacatttacataaaa |
689275 |
T |
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| Q |
524 |
ataaacaataaattttcgtgtaagtcatgtttacactcaagctataaa |
571 |
Q |
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| T |
689274 |
ataaacaataaattttcgtgtaagtcatgtttacactcaagctataaa |
689227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 74 - 254
Target Start/End: Complemental strand, 689751 - 689568
Alignment:
| Q |
74 |
gtaaggcaggggtatgcttcgtgattggaagtattgtcggcctcaccgtttgatgctaccactgttgggtttcggtgttccgtatatatgcggcaccttt |
173 |
Q |
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| T |
689751 |
gtaaggcaggggtatgcttcgtgattggaagtattgtcggcctcaccgtttgatgctaccactgttgggtttcggtgttccgtatatatacggcaccttt |
689652 |
T |
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| Q |
174 |
tgtaggt---ttgttaccgcgagattgtttgcttcttgcagcctctcgacgtgaataaaatttgttgttcctaaatgttctcta |
254 |
Q |
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| T |
689651 |
tgtaggtttcttgttaccgcgagattgtttgcttcttgcagcctctcgacgtgaataaaatttgttgttcctaaatgttctcta |
689568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 4543983 - 4543943
Alignment:
| Q |
142 |
gtttcggtgttccgtatatatgcggcaccttttgtaggttt |
182 |
Q |
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| T |
4543983 |
gttttggtgttccgtatatatgcggcaccttttgtatgttt |
4543943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 487 - 523
Target Start/End: Complemental strand, 9593054 - 9593018
Alignment:
| Q |
487 |
tgtataatgatttatgtttgaatacatttacataaaa |
523 |
Q |
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| T |
9593054 |
tgtaaaatgatttatgtttgaatatatttacataaaa |
9593018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 492 - 525
Target Start/End: Original strand, 441610 - 441643
Alignment:
| Q |
492 |
aatgatttatgtttgaatacatttacataaaaat |
525 |
Q |
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| T |
441610 |
aatgatttatgtttgaatacatttatataaaaat |
441643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 487 - 523
Target Start/End: Original strand, 50751271 - 50751307
Alignment:
| Q |
487 |
tgtataatgatttatgtttgaatacatttacataaaa |
523 |
Q |
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| T |
50751271 |
tgtaaaatgatttatgtttgaatacagttacataaaa |
50751307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 141 - 177
Target Start/End: Complemental strand, 40582340 - 40582304
Alignment:
| Q |
141 |
ggtttcggtgttccgtatatatgcggcaccttttgta |
177 |
Q |
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| T |
40582340 |
ggttttggtgttccgtatatatgcggcaccttgtgta |
40582304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 149 - 177
Target Start/End: Original strand, 45032594 - 45032622
Alignment:
| Q |
149 |
tgttccgtatatatgcggcaccttttgta |
177 |
Q |
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| T |
45032594 |
tgttccgtatatatgcggcaccttttgta |
45032622 |
T |
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