View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1149_high_19 (Length: 529)

Name: NF1149_high_19
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1149_high_19
NF1149_high_19
[»] chr1 (6 HSPs)
chr1 (142-377)||(51866402-51866637)
chr1 (46-137)||(30647293-30647386)
chr1 (412-445)||(18610773-18610806)
chr1 (412-445)||(42539418-42539451)
chr1 (413-445)||(9882697-9882729)
chr1 (409-445)||(51866322-51866358)
[»] chr3 (7 HSPs)
chr3 (149-353)||(22931665-22931877)
chr3 (174-357)||(36082705-36082896)
chr3 (412-445)||(1207946-1207979)
chr3 (50-137)||(1298999-1299088)
chr3 (412-445)||(7867749-7867782)
chr3 (412-445)||(43441672-43441705)
chr3 (412-445)||(45205288-45205321)
[»] chr2 (1 HSPs)
chr2 (178-289)||(7468073-7468183)
[»] chr8 (6 HSPs)
chr8 (191-231)||(44912716-44912756)
chr8 (412-445)||(37562179-37562212)
chr8 (410-442)||(37343372-37343404)
chr8 (50-136)||(17782343-17782431)
chr8 (412-445)||(36497661-36497694)
chr8 (191-223)||(44913707-44913739)
[»] chr4 (8 HSPs)
chr4 (191-231)||(24412977-24413017)
chr4 (412-445)||(41495013-41495046)
chr4 (412-445)||(940297-940330)
chr4 (412-445)||(33093142-33093175)
chr4 (412-445)||(35017153-35017186)
chr4 (412-445)||(47014939-47014972)
chr4 (412-440)||(20056396-20056424)
chr4 (191-231)||(26905357-26905397)
[»] chr6 (5 HSPs)
chr6 (15-136)||(8855264-8855387)
chr6 (412-445)||(24038182-24038215)
chr6 (412-445)||(27334858-27334891)
chr6 (412-445)||(27395598-27395631)
chr6 (225-282)||(5437834-5437893)
[»] chr5 (4 HSPs)
chr5 (412-445)||(8959160-8959193)
chr5 (79-136)||(25632688-25632746)
chr5 (412-445)||(14508195-14508228)
chr5 (412-445)||(39788744-39788777)
[»] scaffold0154 (1 HSPs)
scaffold0154 (411-445)||(19729-19763)
[»] chr7 (1 HSPs)
chr7 (411-445)||(37832449-37832483)
[»] scaffold0662 (1 HSPs)
scaffold0662 (412-445)||(1078-1111)


Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 142 - 377
Target Start/End: Complemental strand, 51866637 - 51866402
Alignment:
Q  142 agtttgattagttttaattcaagtttgtttggattaaaacatgtttagtagtttgttacaagttagttaggtgatctagctaagtttgtttagattactt 241  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  51866637 agtttgataagttttaattcaagtttgtttggatcaaaacatgtttagtagtttgttacaagttagttagatgatctagctaagtttgtttagattactt 51866538  T
Q  242 actaaacaagcaaagtgaataagtcctatataaggcatgttataactattttcacaatctaatgaaaaagacatagtttacaacaattaatctcttcatt 341  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  51866537 actaaacaagcaaagtgaataagtcctatataaggcatgttgtaactattttcacaatctaatgaaaaagacatagtttacaacaattattctcttcatt 51866438  T
Q  342 cttctctcaattctctcaaaattttataagaaactc 377  Q
    |||||||||||||||||||||||| |||||||||||    
T  51866437 cttctctcaattctctcaaaatttcataagaaactc 51866402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 137
Target Start/End: Original strand, 30647293 - 30647386
Alignment:
Q  46 aagattgacaggttgaacaagcttagaggtttaattggtatggtaaaattgaaaatttgaattaaggaaggatgttaatt--taattcaagttt 137  Q
    ||||||| |||||| |||||||||||| | || ||||| |||||| ||||| ||| |||| |||||| ||||||||| ||  ||||||||||||    
T  30647293 aagattgtcaggtttaacaagcttagaagcttgattggcatggtagaattggaaacttgatttaagggaggatgttagtttctaattcaagttt 30647386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 445
Target Start/End: Original strand, 18610773 - 18610806
Alignment:
Q  412 gagaaatgatatttgtacaactattatgtgacaa 445  Q
    ||||||||||||||||||||||||| ||||||||    
T  18610773 gagaaatgatatttgtacaactattttgtgacaa 18610806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 445
Target Start/End: Original strand, 42539418 - 42539451
Alignment:
Q  412 gagaaatgatatttgtacaactattatgtgacaa 445  Q
    ||||||||||||||||||||| ||||||||||||    
T  42539418 gagaaatgatatttgtacaaccattatgtgacaa 42539451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 413 - 445
Target Start/End: Complemental strand, 9882729 - 9882697
Alignment:
Q  413 agaaatgatatttgtacaactattatgtgacaa 445  Q
    |||||||||||||||||||||||| ||||||||    
T  9882729 agaaatgatatttgtacaactattttgtgacaa 9882697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 445
Target Start/End: Complemental strand, 51866358 - 51866322
Alignment:
Q  409 taggagaaatgatatttgtacaactattatgtgacaa 445  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  51866358 taggagaaatgatatttgtacaaccattgtgtgacaa 51866322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 149 - 353
Target Start/End: Complemental strand, 22931877 - 22931665
Alignment:
Q  149 ttagttttaattcaagtttgtttggattaaaacatgtttagtagtttgttacaagttagttaggtgatctagctaagtttgtt---------tagattac 239  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||         |||||| |    
T  22931877 ttagttttaattcaagtttgtttggaataaaacatgtttagtagtttgttacaagtgagtcaggtgatgtagctaagtttgttaagtttgtttagattgc 22931778  T
Q  240 ttactaaacaagcaaagtgaataagtcctatataaggcatgttataactattttcacaatctaatgaaaaagacatagtttacaacaattaatctcttca 339  Q
    ||||||| |||||||| ||||||||||||||||||||  |||| |||||||||||||||| |||||||| | |||||||||||||||||||||||||||     
T  22931777 ttactaagcaagcaaattgaataagtcctatataaggagtgttgtaactattttcacaat-taatgaaatacacatagtttacaacaattaatctcttct 22931679  T
Q  340 ttcttctctcaatt 353  Q
    ||||||||||||||    
T  22931678 ttcttctctcaatt 22931665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 174 - 357
Target Start/End: Original strand, 36082705 - 36082896
Alignment:
Q  174 attaaaacatgtttagtagtttgttacaagttagttaggtgatctagctaagtttgt--------ttagattacttactaaacaagcaaagtgaataagt 265  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||        ||||||| |||||||| |||  || ||||||||||    
T  36082705 attaaaacatggttagtagtttgttacaagttagttaggtgatctagctaagtttgttagtatgattagatttcttactaagcaacaaacgtgaataagt 36082804  T
Q  266 cctatataa--ggcatgttataactattttcacaatctaatgaaaaagacatagtttacaacaattaatctcttcattcttctctcaattctct 357  Q
    | |||||||  || ||||| |||||| ||||| |||| |||| || | |||||| ||||||||| ||||| |||| ||||||||||||||||||    
T  36082805 cttatataaagggaatgttgtaactactttcataatccaatg-aatacacatagcttacaacaa-taatcccttccttcttctctcaattctct 36082896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 412 - 445
Target Start/End: Original strand, 1207946 - 1207979
Alignment:
Q  412 gagaaatgatatttgtacaactattatgtgacaa 445  Q
    ||||||||||||||||||||||||||||||||||    
T  1207946 gagaaatgatatttgtacaactattatgtgacaa 1207979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 1298999 - 1299088
Alignment:
Q  50 ttgacaggttgaacaagcttagaggtttaattggtatggtaaaattgaaaatttgaattaaggaaggatgttaatt--taattcaagttt 137  Q
    ||||||| || ||| |||||| | | || |||||||||||| ||||| ||| ||||||||||| ||||||||| ||  ||||||||||||    
T  1298999 ttgacagattcaacgagcttaaaagcttgattggtatggtagaattggaaacttgaattaagggaggatgttagtttctaattcaagttt 1299088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 445
Target Start/End: Complemental strand, 7867782 - 7867749
Alignment:
Q  412 gagaaatgatatttgtacaactattatgtgacaa 445  Q
    ||||||||||||||||||||||||| ||||||||    
T  7867782 gagaaatgatatttgtacaactattttgtgacaa 7867749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 445
Target Start/End: Original strand, 43441672 - 43441705
Alignment:
Q  412 gagaaatgatatttgtacaactattatgtgacaa 445  Q
    ||||||||||||||||||||| ||||||||||||    
T  43441672 gagaaatgatatttgtacaaccattatgtgacaa 43441705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 445
Target Start/End: Original strand, 45205288 - 45205321
Alignment:
Q  412 gagaaatgatatttgtacaactattatgtgacaa 445  Q
    ||||||||||||||||||||||||| ||||||||    
T  45205288 gagaaatgatatttgtacaactattttgtgacaa 45205321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 178 - 289
Target Start/End: Complemental strand, 7468183 - 7468073
Alignment:
Q  178 aaacatgtttagtagtttgttacaagttagttaggtgatctagctaagtttgtttagattacttactaaacaagcaaagtgaataagtcctatataaggc 277  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||| |||||||| ||||  | ||||||||| ||||||||| ||    
T  7468183 aaacatgtttagtagtttgttacaagttagttagatgacctagctaagtttg-ttagattgcttactaagcaagttatgtgaataagccctatataaagc 7468085  T
Q  278 atgttataacta 289  Q
    ||||| ||||||    
T  7468084 atgttgtaacta 7468073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 44912756 - 44912716
Alignment:
Q  191 agtttgttacaagttagttaggtgatctagctaagtttgtt 231  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  44912756 agtttgttacaagttagttaggtaatctagctaagtttgtt 44912716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 412 - 445
Target Start/End: Complemental strand, 37562212 - 37562179
Alignment:
Q  412 gagaaatgatatttgtacaactattatgtgacaa 445  Q
    ||||||||||||||||||||||||||||||||||    
T  37562212 gagaaatgatatttgtacaactattatgtgacaa 37562179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 442
Target Start/End: Original strand, 37343372 - 37343404
Alignment:
Q  410 aggagaaatgatatttgtacaactattatgtga 442  Q
    |||||||||||||||||||||||||||||||||    
T  37343372 aggagaaatgatatttgtacaactattatgtga 37343404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 136
Target Start/End: Complemental strand, 17782431 - 17782343
Alignment:
Q  50 ttgacaggttgaacaagcttagaggtttaattggtatggtaaaattgaaaatttgaattaaggaaggatgttaat--ttaattcaagtt 136  Q
    |||||||||| | |||||| ||| | || ||||||||||| ||| || ||| ||||||||||| ||||||||| |  ||||||||||||    
T  17782431 ttgacaggttcatcaagctaagaagcttgattggtatggtgaaagtggaaacttgaattaagggaggatgttagttgttaattcaagtt 17782343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 445
Target Start/End: Original strand, 36497661 - 36497694
Alignment:
Q  412 gagaaatgatatttgtacaactattatgtgacaa 445  Q
    ||||||||||||||||||||||||| ||||||||    
T  36497661 gagaaatgatatttgtacaactattttgtgacaa 36497694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 44913739 - 44913707
Alignment:
Q  191 agtttgttacaagttagttaggtgatctagcta 223  Q
    ||||||||||||||||||||||| |||||||||    
T  44913739 agtttgttacaagttagttaggtaatctagcta 44913707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 24413017 - 24412977
Alignment:
Q  191 agtttgttacaagttagttaggtgatctagctaagtttgtt 231  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  24413017 agtttgttacaagttagttaggtaatctagctaagtttgtt 24412977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 412 - 445
Target Start/End: Original strand, 41495013 - 41495046
Alignment:
Q  412 gagaaatgatatttgtacaactattatgtgacaa 445  Q
    ||||||||||||||||||||||||||||||||||    
T  41495013 gagaaatgatatttgtacaactattatgtgacaa 41495046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 445
Target Start/End: Complemental strand, 940330 - 940297
Alignment:
Q  412 gagaaatgatatttgtacaactattatgtgacaa 445  Q
    ||||||||||||||||||||||||| ||||||||    
T  940330 gagaaatgatatttgtacaactattttgtgacaa 940297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 445
Target Start/End: Complemental strand, 33093175 - 33093142
Alignment:
Q  412 gagaaatgatatttgtacaactattatgtgacaa 445  Q
    ||||||||||||||||||||||||| ||||||||    
T  33093175 gagaaatgatatttgtacaactattttgtgacaa 33093142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 445
Target Start/End: Original strand, 35017153 - 35017186
Alignment:
Q  412 gagaaatgatatttgtacaactattatgtgacaa 445  Q
    ||||||||||||||||||||||||| ||||||||    
T  35017153 gagaaatgatatttgtacaactattttgtgacaa 35017186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 445
Target Start/End: Original strand, 47014939 - 47014972
Alignment:
Q  412 gagaaatgatatttgtacaactattatgtgacaa 445  Q
    ||||||||||||||||||||||||| ||||||||    
T  47014939 gagaaatgatatttgtacaactattttgtgacaa 47014972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 440
Target Start/End: Original strand, 20056396 - 20056424
Alignment:
Q  412 gagaaatgatatttgtacaactattatgt 440  Q
    |||||||||||||||||||||||||||||    
T  20056396 gagaaatgatatttgtacaactattatgt 20056424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 26905357 - 26905397
Alignment:
Q  191 agtttgttacaagttagttaggtgatctagctaagtttgtt 231  Q
    |||||||||||||||||||||   |||||||||||||||||    
T  26905357 agtttgttacaagttagttagaaaatctagctaagtttgtt 26905397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 15 - 136
Target Start/End: Complemental strand, 8855387 - 8855264
Alignment:
Q  15 gcaacttgctgatatgttttcaaaagttgttaagattgacaggttgaacaagcttagaggtttaattggtatggtaaaattg-aaaatttgaattaagga 113  Q
    ||||| || |||||||||| |||  ||||| |||||||| ||||| |||||||| ||| | || ||||| ||||| || ||| |||| |||||||||||     
T  8855387 gcaacatgttgatatgtttacaattgttgtgaagattgaaaggtttaacaagctcagaagcttgattggaatggtgaagttggaaaacttgaattaaggg 8855288  T
Q  114 aggatgtta-atttaattcaagtt 136  Q
    |||||||||  |||||||||||||    
T  8855287 aggatgttagttttaattcaagtt 8855264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 445
Target Start/End: Original strand, 24038182 - 24038215
Alignment:
Q  412 gagaaatgatatttgtacaactattatgtgacaa 445  Q
    ||||||||||||||||||||| ||||||||||||    
T  24038182 gagaaatgatatttgtacaaccattatgtgacaa 24038215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 445
Target Start/End: Original strand, 27334858 - 27334891
Alignment:
Q  412 gagaaatgatatttgtacaactattatgtgacaa 445  Q
    ||||||||||||||||||||||||| ||||||||    
T  27334858 gagaaatgatatttgtacaactattttgtgacaa 27334891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 445
Target Start/End: Original strand, 27395598 - 27395631
Alignment:
Q  412 gagaaatgatatttgtacaactattatgtgacaa 445  Q
    ||||||||||||||||||||||||| ||||||||    
T  27395598 gagaaatgatatttgtacaactattttgtgacaa 27395631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 282
Target Start/End: Original strand, 5437834 - 5437893
Alignment:
Q  225 gtttgtttagattacttactaaacaagcaaagtgaataag--tcctatataaggcatgtt 282  Q
    ||||||||||||  |||||||| ||||||| |||||||||  || |||||||||||||||    
T  5437834 gtttgtttagatagcttactaagcaagcaatgtgaataagcctcttatataaggcatgtt 5437893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 412 - 445
Target Start/End: Original strand, 8959160 - 8959193
Alignment:
Q  412 gagaaatgatatttgtacaactattatgtgacaa 445  Q
    ||||||||||||||||||||||||||||||||||    
T  8959160 gagaaatgatatttgtacaactattatgtgacaa 8959193  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 136
Target Start/End: Original strand, 25632688 - 25632746
Alignment:
Q  79 attggtatggtaaaattgaaaatttgaattaaggaaggatgtta-atttaattcaagtt 136  Q
    ||||||||||| | | |||||| |||||||||||||||||||||  |||||||||||||    
T  25632688 attggtatggtgagagtgaaaacttgaattaaggaaggatgttagttttaattcaagtt 25632746  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 445
Target Start/End: Complemental strand, 14508228 - 14508195
Alignment:
Q  412 gagaaatgatatttgtacaactattatgtgacaa 445  Q
    ||||||||||||||||||||||||| ||||||||    
T  14508228 gagaaatgatatttgtacaactattttgtgacaa 14508195  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 445
Target Start/End: Complemental strand, 39788777 - 39788744
Alignment:
Q  412 gagaaatgatatttgtacaactattatgtgacaa 445  Q
    ||||||||||||||||||||| ||||||||||||    
T  39788777 gagaaatgatatttgtacaaccattatgtgacaa 39788744  T

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Target: scaffold0154 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 445
Target Start/End: Complemental strand, 19763 - 19729
Alignment:
Q  411 ggagaaatgatatttgtacaactattatgtgacaa 445  Q
    |||||||||||||||||||||||||| ||||||||    
T  19763 ggagaaatgatatttgtacaactattttgtgacaa 19729  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 445
Target Start/End: Original strand, 37832449 - 37832483
Alignment:
Q  411 ggagaaatgatatttgtacaactattatgtgacaa 445  Q
    |||||||||||||||||||||||||| ||||||||    
T  37832449 ggagaaatgatatttgtacaactattttgtgacaa 37832483  T

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Target: scaffold0662 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 445
Target Start/End: Original strand, 1078 - 1111
Alignment:
Q  412 gagaaatgatatttgtacaactattatgtgacaa 445  Q
    ||||||||||||||||||||||||| ||||||||    
T  1078 gagaaatgatatttgtacaactattttgtgacaa 1111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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