View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_high_21 (Length: 504)
Name: NF1149_high_21
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 34 - 490
Target Start/End: Original strand, 42011689 - 42012145
Alignment:
| Q |
34 |
ttcatctctatcttcaagaatcagttggtactgatctataaattgtcttaatgaagtatcaacttggatatatttgtcaaaaatagaatttaaactttca |
133 |
Q |
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| T |
42011689 |
ttcatctctatcttcaagaatcagttggtactgatctataaattgtcttaatgaagtatcaacttggatatatttgtcaaaaatagaatttaaactttca |
42011788 |
T |
|
| Q |
134 |
aagcgcgagccagtagacaagccagcaagagaaatatccttcataaacgttggcacccaacatgcacgatcatcatacaaggtttgaacccacttaacat |
233 |
Q |
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| T |
42011789 |
aagcgcgagccagtagacaagccagcaagagaaatatccttcataaacgttggcacccaacatgcacgatcatcatacaaggtttgaacccacttaacat |
42011888 |
T |
|
| Q |
234 |
ctctaagtttaaacctatcaaccagcttccaccatctcttttcaaattgctcttctgtccatgattgatatatacacttgttgaacttttccataaagct |
333 |
Q |
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| T |
42011889 |
ctctaagtttaaacctatcaaccagcttccaccatctcttttcaaattgctcttctgtccatgattgatatatacacttgttgaacttttccataaagct |
42011988 |
T |
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| Q |
334 |
atcatgccatgtacttaagaactcaagttgtttcggtatcttttccaaaacatgccacaaacaaaaacaatgacgcgttccaggaaaaacagcagcaacg |
433 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42011989 |
atcatgccatgtacttaagaactcaagttgtttcggtatcttttccaaaacatgccacaaacaaaaacaatgacgcgttccaggaaaaacagcagcaaca |
42012088 |
T |
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| Q |
434 |
gcagctttaatagcatcattttggtcagttagaatcacttgcggagcacgttccccc |
490 |
Q |
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| T |
42012089 |
gcagctttaatagcatcattttggtcagttagaatcacttgcggagcacgttccccc |
42012145 |
T |
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