View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1149_high_25 (Length: 488)
Name: NF1149_high_25
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_high_25 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 83 - 476
Target Start/End: Original strand, 42092419 - 42092806
Alignment:
| Q |
83 |
aagatgggttcattgacttgcaaaaagtaagtttgaatttgatgcataa---ccaattgaacaaataatggaagaaagatcagtaattggctcactcagc |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
42092419 |
aagatgggttcattgacttgcaaaaagtaagtttgaatttgatgcataataaccaattgaacaaataattgaagaaagatcagtaattggctcactcagc |
42092518 |
T |
|
| Q |
180 |
attgtgacatgacttgactgataccaaactgagatacggacccccaatgagggagcatggccaatatgtctcatatactttgcaaa-taatgaaagcctt |
278 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
42092519 |
attgtgac---------------------tgagatacggacccccaatgagggagcatggccaatatgtctcatatactttgcaaaataatgaa-gcctt |
42092596 |
T |
|
| Q |
279 |
tggatttggctcaaataatccccaaccgtttctttctaaaactaaatttagaaatcatcaatcacg----ccgtccatatgaactcttgagacttaagag |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
42092597 |
tggatttggctcaaataatccccaaccgtttctttctaaaactaaatttagaaatcatcaatcacgccgtccgtccatatgaactcttgagacttaagag |
42092696 |
T |
|
| Q |
375 |
tccaatgtagtacaata----atatagtatgactagtaa-ttataagtgggacataattcaccatacaaatgg---tttttataggattgtggcttaaat |
466 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42092697 |
tccaatgtagtacaataatatatatagtatgactagtaatttataagtgggacataattcaccatacaaatggttttttttataggattgtggcttaaat |
42092796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University