View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1149_high_36 (Length: 439)
Name: NF1149_high_36
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_high_36 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 30 - 433
Target Start/End: Complemental strand, 45273950 - 45273547
Alignment:
| Q |
30 |
cagacacgatgaatttgaatactggtattgtgatccaggattgcaatatcatcccagaagcagcattgttcccagaaagattcacaattcggtcttactt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45273950 |
cagacacgatgaatttgaatactggtattgtgatccaggattgcaatatcatcccagaagcagcattgttcccagaaagattcacaattcggtcttactt |
45273851 |
T |
|
| Q |
130 |
gggcagaccatggaagtatttagcaaagactgtcgtcatggaatccaccattggtgatttcattcattcagatggatggaccatttggcaaggagaacaa |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
45273850 |
gggcagaccatggaagtatttagcaaagactgtcgtcatggaatccaccattggtgatttcattcatccagatggatggaccatttggcaaggagaacaa |
45273751 |
T |
|
| Q |
230 |
aatcacaacacatgttactatgcagagtatgccaacactggacctggtgccaatgttgctaggagggtcaagtggaggggttatcacggtgtcattagca |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
45273750 |
aatcacaacacatgttactatgcagagtatgcaaacaccggacctggtgccaatgttgcgaggagggtcaagtggaagggttatcacggtgtcattagca |
45273651 |
T |
|
| Q |
330 |
gggccgaggctaccaaattcaccgctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactacctttg |
429 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
45273650 |
gggccgaggctaacaaattcacagctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactaccttgg |
45273551 |
T |
|
| Q |
430 |
cttc |
433 |
Q |
| |
|
|||| |
|
|
| T |
45273550 |
cttc |
45273547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 30 - 433
Target Start/End: Complemental strand, 45282194 - 45281791
Alignment:
| Q |
30 |
cagacacgatgaatttgaatactggtattgtgatccaggattgcaatatcatcccagaagcagcattgttcccagaaagattcacaattcggtcttactt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45282194 |
cagacacgatgaatttgaatactggtattgtgatccaggattgcaatatcatcccagaagcagcattgttcccagaaagattcacaattcggtcttactt |
45282095 |
T |
|
| Q |
130 |
gggcagaccatggaagtatttagcaaagactgtcgtcatggaatccaccattggtgatttcattcattcagatggatggaccatttggcaaggagaacaa |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
45282094 |
gggcagaccatggaagtatttagcaaagactgtcgtcatggaatccaccattggtgatttcattcatccagatggatggaccatttggcaaggagaacaa |
45281995 |
T |
|
| Q |
230 |
aatcacaacacatgttactatgcagagtatgccaacactggacctggtgccaatgttgctaggagggtcaagtggaggggttatcacggtgtcattagca |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
45281994 |
aatcacaacacatgttactatgcagagtatgcaaacaccggacctggtgccaatgttgcgaggagggtcaagtggaagggttatcacggtgtcattagca |
45281895 |
T |
|
| Q |
330 |
gggccgaggctaccaaattcaccgctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactacctttg |
429 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
45281894 |
gggccgaggctaacaaattcacagctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactaccttgg |
45281795 |
T |
|
| Q |
430 |
cttc |
433 |
Q |
| |
|
|||| |
|
|
| T |
45281794 |
cttc |
45281791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 44 - 433
Target Start/End: Complemental strand, 45293520 - 45293131
Alignment:
| Q |
44 |
ttgaatactggtattgtgatccaggattgcaatatcatcccagaagcagcattgttcccagaaagattcacaattcggtcttacttgggcagaccatgga |
143 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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|
| T |
45293520 |
ttgaatactggtattgtgatccaaggctgcaatattgtcccagaagcagcattgttccctcaaagattcacaattaaatcttacttgggcagaccatgga |
45293421 |
T |
|
| Q |
144 |
agtatttagcaaagactgtcgtcatggaatccaccattggtgatttcattcattcagatggatggaccatttggcaaggagaacaaaatcacaacacatg |
243 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||| | | |||||||| |
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|
| T |
45293420 |
aggttttagcaaagacggtcgtcatggaatccaccattggtgattttattcatccagatggatggaccccttggcaaggagaacattttgaaaacacatg |
45293321 |
T |
|
| Q |
244 |
ttactatgcagagtatgccaacactggacctggtgccaatgttgctaggagggtcaagtggaggggttatcacggtgtcattagcagggccgaggctacc |
343 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |||| |||||| ||||||||| |||||||||||||| |||||||||||||||||||||| |
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|
| T |
45293320 |
ttactatgcagagtacgccaacactggacctggtgccaatattgccaggaggatcaagtggaagggttatcacggtgccattagcagggccgaggctacc |
45293221 |
T |
|
| Q |
344 |
aaattcaccgctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactacctttgcttc |
433 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||| ||||| |||||||||| ||||||| |||||||| | |||||| ||||| |
|
|
| T |
45293220 |
aaattcactgctggtttatggctccaagctggacccaagtccgcagccgaatggttgactggtcttaatgttcctaattaccttggcttc |
45293131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 44 - 433
Target Start/End: Complemental strand, 45302480 - 45302091
Alignment:
| Q |
44 |
ttgaatactggtattgtgatccaggattgcaatatcatcccagaagcagcattgttcccagaaagattcacaattcggtcttacttgggcagaccatgga |
143 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45302480 |
ttgaatactggtattgtgatccaaggctgcaatattgtcccagaagcagcattgttccctcaaagattcacaattaaatcttacttgggcagaccatgga |
45302381 |
T |
|
| Q |
144 |
agtatttagcaaagactgtcgtcatggaatccaccattggtgatttcattcattcagatggatggaccatttggcaaggagaacaaaatcacaacacatg |
243 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||| | | |||||||| |
|
|
| T |
45302380 |
aggttttagcaaagacggtcgtcatggaatccaccattggtgattttattcatccagatggatggaccccttggcaaggagaacattttgaaaacacatg |
45302281 |
T |
|
| Q |
244 |
ttactatgcagagtatgccaacactggacctggtgccaatgttgctaggagggtcaagtggaggggttatcacggtgtcattagcagggccgaggctacc |
343 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |||| |||||| ||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45302280 |
ttactatgcagagtacgccaacactggacctggtgccaatattgccaggaggatcaagtggaagggttatcacggtgccattagcagggccgaggctacc |
45302181 |
T |
|
| Q |
344 |
aaattcaccgctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactacctttgcttc |
433 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||| ||||| |||||||||| ||||||| |||||||| | |||||| ||||| |
|
|
| T |
45302180 |
aaattcactgctggtttatggctccaagctggacccaagtccgcagccgaatggttgactggtcttaatgttcctaattaccttggcttc |
45302091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 39 - 433
Target Start/End: Complemental strand, 45270409 - 45269985
Alignment:
| Q |
39 |
tgaatttgaatactggtattgtgatccaggattgcaatatcatcccagaagcagcattgttcccagaaagattcacaattcggtcttacttgggcagacc |
138 |
Q |
| |
|
||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||| |||| ||||||| || ||||||||||||||||||| |
|
|
| T |
45270409 |
tgaatatgaatactggtattgttatccaggactgcaatatcatcccagaagcagcattggtccctgaaaaattcacagttaggtcttacttgggcagacc |
45270310 |
T |
|
| Q |
139 |
atggaagtatttagcaaagactgtcgtcatggaatccaccattggtgatttcattcattcagatggatggaccatttggcaaggagaacaaa-------- |
230 |
Q |
| |
|
|||| | || | ||||| | ||| ||||||||||||| ||||||||||| |||||| |||||||||||||| ||||| || |||||||| |
|
|
| T |
45270309 |
atggcaaaatgaatcaaaggcagtcatcatggaatccacaattggtgattttattcatcaagatggatggaccacttggccagaagaacaaaacaagcca |
45270210 |
T |
|
| Q |
231 |
----------atcacaacacatgttactatgcagagtatgccaacactggacctggtgccaatgttgctaggagggtcaagtggaggggttatcacggtg |
320 |
Q |
| |
|
|| | ||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| | |||| |
|
|
| T |
45270209 |
gaaaaacatcatgaaaacacgtgttactttgcagagtatgccaacactggacctggtgccaatgttgcgaggagggtcaagtggaagggttataagggtg |
45270110 |
T |
|
| Q |
321 |
tcattagcagggccgaggctaccaaattcaccgctggtatatggctccaagctgg------------acccaagtctgcagctgaatggttgaatggtct |
408 |
Q |
| |
|
||||||||||| |||||||||||||| |||||| ||||||||||| | ||||| |||||||||||||| |||||||||| | | ||| |
|
|
| T |
45270109 |
tcattagcaggagcgaggctaccaaatacaccgccagtatatggctcgatgctggaccgaagactgcacccaagtctgcagttgaatggttgcacgatct |
45270010 |
T |
|
| Q |
409 |
tcatgttcctcactacctttgcttc |
433 |
Q |
| |
|
||||||||||||||||||| ||||| |
|
|
| T |
45270009 |
tcatgttcctcactaccttggcttc |
45269985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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